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AT3G20290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EPS15 homology domain 1
Curator
Summary (TAIR10)
Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).
Computational
Description (TAIR10)
EPS15 homology domain 1 (EHD1); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: endosome, microsome, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase domain (InterPro:IPR001401), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: EPS15 homology domain 2 (TAIR:AT4G05520.1); Has 2747 Blast hits to 1834 proteins in 266 species: Archae - 2; Bacteria - 80; Metazoa - 1639; Fungi - 521; Plants - 217; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).
Protein Annotations
EC:3.6.5.2eggNOG:ENOG410XYGBeggNOG:KOG1954EMBL:AB024036
EMBL:AK317308EMBL:AY034911EMBL:BT004414EMBL:CP002686
EnsemblPlants:AT3G20290EnsemblPlants:AT3G20290.1EnsemblPlants:AT3G20290.2entrez:821573
Gene3D:1.10.238.10Gene3D:3.40.50.300GeneID:821573Genevisible:Q94CF0
GO:GO:0005509GO:GO:0005525GO:GO:0005737GO:GO:0005768
GO:GO:0005886GO:GO:0006897GO:GO:0009506GO:GO:0010008
GO:GO:0016020GO:GO:0016787GO:GO:0032456GO:GO:0042538
GO:GO:0043231GO:GO:0051260Gramene:AT3G20290.1Gramene:AT3G20290.2
hmmpanther:PTHR11216hmmpanther:PTHR11216:SF73HOGENOM:HOG000242040IntAct:Q94CF0
InterPro:IPR000261InterPro:IPR002048InterPro:IPR011992InterPro:IPR022812
InterPro:IPR027417InterPro:IPR030381InterPro:IPR031692KEGG:ath:AT3G20290
KO:K12483ncoils:CoilOMA:IYKEWFEPaxDb:Q94CF0
Pfam:PF00350Pfam:PF12763Pfam:PF16880Pfam:Q94CF0
Pfscan:PS50031Pfscan:PS50222Pfscan:PS51718PhylomeDB:Q94CF0
PRIDE:Q94CF0PRO:PR:Q94CF0PROSITE:PS50031PROSITE:PS50222
PROSITE:PS51718ProteinModelPortal:Q94CF0Proteomes:UP000006548RefSeq:NP_001030731.1
RefSeq:NP_566657.1SMART:SM00027SMART:SM00054SMR:Q94CF0
STRING:3702.AT3G20290.1SUPFAM:SSF47473SUPFAM:SSF52540TAIR:AT3G20290
tair10-symbols:ATEHD1tair10-symbols:EHD1UniGene:At.8171UniProt:Q94CF0
Coordinates (TAIR10) chr3:-:7075057..7078655
Molecular Weight (calculated) 61233.60 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.35
Length 545 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)