AT4G31420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Zinc finger protein 622 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:15245987..15247763 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46000.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.39 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 404 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPGLTCNACN MEFKDEEERN LHYKSDWHRY NLKRKVAGVP GVTEALFEAR QSALAQEKNK SNEAPMLYTC AICAKGYRSS KAHEQHLQSR SHVLRVSQGT 101: SINGEEDIAI IRQLPRRVQH RGSIDDDSED EWVEVDSDEE LAAEEASDSL SKLNVNESGS AEDMDDDGDA DKYELDPTCC LMCDKKHKTL ESCMLHMHKH 201: HGFFIPDIEY LKDPEGLLTY LGLKVKRDFM CLYCNELCRP FSSLEAVRKH MEAKSHCKLH YGDGDDEEDA ELEEFYDYSS SYVDEAGKQI VVSGETDNTV 301: ELVGGSELLI TEKSENTTTS KTLGSREFMR YYRQKPRPTS QDSNQIIASL SSRYKSLGLK TVPSKEETLR MKVRKEMSKR GETMRTKIGV KSNVIRNLPN 401: NVPY |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)