AT1G32340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : NDR1/HIN1-like 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3653 Blast hits to 3199 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 604; Plants - 670; Viruses - 7; Other Eukaryotes - 636 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:-:11663462..11666037 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 78600.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 688 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRGTHGGSGR NHDRRYIRRD AGIVNPVNDH PKSEHQKEDT TSTDLSSAAA FPSTSQPIQN LDHSTKPSKS HRNRRSRGSN SKPRPVEKPE VNFAESDVVD 101: CLADELSRLK VKQNSHSVNM EEKFHHSSSD HSNCEESELK RAESEEIADG VDEYETKEDI MLTILKDLRS SVSEPELTEE QLKMNDQLQE DELLALGYIY 201: GGNMFIFDRY NDMRYFQVHV NVEATSEYTI STKLNLQADS SKESEDFLYS FKAQHLPPIV LKCLLPKAYP SHLPPYFLIS VQWMNPDKIS SLCSKLDSLW 301: SEQPGQEVLY QWTDWLQNSS ISHLGFDNEI VLGPYGVTCS RDKRAVSGSR SPDSDIPYIR SYDDEKRHDS FLQSLHECCI CFSESAGIDF VKLPCQHFFC 401: LKCMKTYTDI HVTEGTVNKL KCPDSKCGET VPPGILKRLL GDEAYERWET LMLQKTLESM TDVAYCPRCE TPCIEDEEQL ALCFKCYFSF CTLCKEKRHV 501: GVACMSPELR LQILQERQDS SRLGEEQRRK EKEMINEIMS VKVIMKSAKQ CPSCKIAISR TGGCNKMVCN NCGQYFCYRC NEAITGYEHF SEGKCELFPQ 601: EAIQEWNEMM NERQVIGQIQ AQLFAQGGQF PQRGQLCPNC RQFNGKAGNN NHLFCWACQA HFCYLCKKVV KKSAQHYGPK GCKQHTDG |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)