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AT1G32340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NDR1/HIN1-like 8
Curator
Summary (TAIR10)
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.
Computational
Description (TAIR10)
NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3653 Blast hits to 3199 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 604; Plants - 670; Viruses - 7; Other Eukaryotes - 636 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y5R1eggNOG:KOG1814EMBL:AC007767EMBL:AC084110
EMBL:AY099548EMBL:BT002115EMBL:CP002684EnsemblPlants:AT1G32340
EnsemblPlants:AT1G32340.1entrez:840126Gene3D:3.10.110.10Gene3D:3.30.40.10
GeneID:840126GO:GO:0000151GO:GO:0000209GO:GO:0005737
GO:GO:0008270GO:GO:0031624GO:GO:0032436GO:GO:0042787
GO:GO:0061630Gramene:AT1G32340.1hmmpanther:PTHR11685hmmpanther:PTHR11685:SF121
HOGENOM:HOG000239382InterPro:IPR001841InterPro:IPR002867InterPro:IPR006575
InterPro:IPR013083InterPro:IPR016135InterPro:IPR017907InterPro:IPR031127
KEGG:ath:AT1G32340KO:K11971OMA:QLRINDQPANTHER:PTHR11685
Pfam:PF01485Pfam:PF05773Pfscan:PS50089Pfscan:PS50908
PhylomeDB:Q9LQM5PIR:B86448PROSITE:PS00518PROSITE:PS50089
PROSITE:PS50908Proteomes:UP000006548RefSeq:NP_174512.1scanprosite:PS00518
SMART:SM00184SMART:SM00591SMART:SM00647SMR:Q9LQM5
STRING:3702.AT1G32340.1SUPFAM:SSF54495SUPFAM:SSF57850TAIR:AT1G32340
tair10-symbols:NHL8UniGene:At.40154UniProt:Q9LQM5
Coordinates (TAIR10) chr1:-:11663462..11666037
Molecular Weight (calculated) 78600.90 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.66
Length 688 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGTHGGSGR NHDRRYIRRD AGIVNPVNDH PKSEHQKEDT TSTDLSSAAA FPSTSQPIQN LDHSTKPSKS HRNRRSRGSN SKPRPVEKPE VNFAESDVVD
101: CLADELSRLK VKQNSHSVNM EEKFHHSSSD HSNCEESELK RAESEEIADG VDEYETKEDI MLTILKDLRS SVSEPELTEE QLKMNDQLQE DELLALGYIY
201: GGNMFIFDRY NDMRYFQVHV NVEATSEYTI STKLNLQADS SKESEDFLYS FKAQHLPPIV LKCLLPKAYP SHLPPYFLIS VQWMNPDKIS SLCSKLDSLW
301: SEQPGQEVLY QWTDWLQNSS ISHLGFDNEI VLGPYGVTCS RDKRAVSGSR SPDSDIPYIR SYDDEKRHDS FLQSLHECCI CFSESAGIDF VKLPCQHFFC
401: LKCMKTYTDI HVTEGTVNKL KCPDSKCGET VPPGILKRLL GDEAYERWET LMLQKTLESM TDVAYCPRCE TPCIEDEEQL ALCFKCYFSF CTLCKEKRHV
501: GVACMSPELR LQILQERQDS SRLGEEQRRK EKEMINEIMS VKVIMKSAKQ CPSCKIAISR TGGCNKMVCN NCGQYFCYRC NEAITGYEHF SEGKCELFPQ
601: EAIQEWNEMM NERQVIGQIQ AQLFAQGGQF PQRGQLCPNC RQFNGKAGNN NHLFCWACQA HFCYLCKKVV KKSAQHYGPK GCKQHTDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)