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AT5G05700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arginine-tRNA protein transferase 1
Curator
Summary (TAIR10)
Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.
Computational
Description (TAIR10)
arginine-tRNA protein transferase 1 (ATE1); CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: arginine-tRNA protein transferase 2 (TAIR:AT3G11240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G05700-MONOMERBioGrid:15733BRENDA:2.3.2.8EC:2.3.2.8
eggNOG:COG2935eggNOG:KOG1193EMBL:AB005237EMBL:AF079100
EMBL:AK175362EMBL:AK176459EMBL:AK220906EMBL:BT046177
EMBL:CP002688EnsemblPlants:AT5G05700EnsemblPlants:AT5G05700.1entrez:830454
GeneID:830454Genevisible:Q9ZT48GO:GO:0004057GO:GO:0005737
GO:GO:0009737GO:GO:0010029GO:GO:0010150GO:GO:0016598
GO:GO:0050994Gramene:AT5G05700.1hmmpanther:PTHR21367hmmpanther:PTHR21367:SF1
HOGENOM:HOG000007968InParanoid:Q9ZT48InterPro:IPR007471InterPro:IPR007472
InterPro:IPR016181InterPro:IPR017137InterPro:IPR030700KEGG:ath:AT5G05700
KO:K00685MINT:MINT-8062002ncoils:CoilOMA:FHKKAIM
PANTHER:PTHR21367PaxDb:Q9ZT48Pfam:PF04376Pfam:PF04377
Pfam:Q9ZT48PhylomeDB:Q9ZT48PIR:T51729PIRSF:PIRSF037207
PRIDE:Q9ZT48PRO:PR:Q9ZT48ProteinModelPortal:Q9ZT48Proteomes:UP000006548
RefSeq:NP_196189.1STRING:3702.AT5G05700.1SUPFAM:SSF55729TAIR:AT5G05700
tair10-symbols:ATATE1tair10-symbols:ATE1tair10-symbols:DLS1UniGene:At.20652
UniProt:Q9ZT48
Coordinates (TAIR10) chr5:-:1712950..1715639
Molecular Weight (calculated) 71544.90 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.70
Length 632 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLKNDASSS HDGGSNRESV IDDHGRRKST CGYCKSPARS SISHGLSAQT LTVYDYQALI DRGWRRSGTY LYKHEMDKTC CPPYTIRLKA SDFVPTKEQQ
101: RVSRRLERFL DGKLDVQPRE QRGASSSGDV SDTRRKTLGA AKSEENKKVE AVMDDLSKNI DQAVQLCIRS GEFPSNMQIP KASVKKVFCA RRKKLAEGTE
201: QILYTSNIAF PIAAAIKRIQ TSEKEGINSA EGNRLSPETI SEMLLSAMHK VGETPDVSIK VCKGHINFLS SAKDSFSDRD VVPNGNISRG ANSLDGSETL
301: HAKKDSENHQ ARKRKLEIHL KRSSFDPEEH ELYKRYQLKV HNDKPGHVVE SSYRRFLVDS PLIDVQPSGD EKVPPCGFGS FHQQYRIDGR LIAVGVVDIL
401: PKCLSSVYLF WDPDYAFLSL GKYSAIQEIN WVIENQARCP SLQYYYLGYY IHSCSKMRYK AAYRPSELLC PLRFQWVPFE VARPMLDKKP YVILSDIAIS
501: HNQCSLLAGA SETLVEPAAS EHEDMEQGET NDNFMGCSDE DEDEDEDDDD DDDDDEEMYE TESEDSHIES DPGSKDNDIN NILIGLYGSQ YRYKEMRQII
601: TPVGRKQLEP MLQSYRKVVG AELSERMVYE IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)