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AT1G53230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Curator
Summary (TAIR10)
Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.
Computational
Description (TAIR10)
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (TCP3); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4 (TAIR:AT3G15030.3); Has 1510 Blast hits to 1508 proteins in 333 species: Archae - 0; Bacteria - 12; Metazoa - 43; Fungi - 12; Plants - 1439; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:26981DNASU:841756eggNOG:ENOG410IGQYeggNOG:ENOG410YG88
EMBL:AC008007EMBL:AF072134EMBL:AY099678EMBL:BT000266
EMBL:CP002684EnsemblPlants:AT1G53230EnsemblPlants:AT1G53230.1entrez:841756
GeneID:841756Genevisible:Q9MAH8GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009733
GO:GO:0009965GO:GO:0030154GO:GO:0045962GO:GO:0048366
Gramene:AT1G53230.1hmmpanther:PTHR31072hmmpanther:PTHR31072:SF3HOGENOM:HOG000078782
InParanoid:Q9MAH8InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT1G53230
OMA:HQSATENPaxDb:Q9MAH8Pfam:PF03634Pfam:Q9MAH8
Pfscan:PS51369PhylomeDB:Q9MAH8PIR:H96572PIR:T52182
PRIDE:Q9MAH8PRO:PR:Q9MAH8PROSITE:PS51369ProteinModelPortal:Q9MAH8
Proteomes:UP000006548RefSeq:NP_564624.2STRING:3702.AT1G53230.1TAIR:AT1G53230
tair10-symbols:TCP3UniGene:At.10667UniGene:At.75138UniProt:Q9MAH8
Coordinates (TAIR10) chr1:-:19850260..19851435
Molecular Weight (calculated) 43046.50 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.82
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)