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AT5G57420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 33
Curator
Summary (TAIR10)
Belongs to auxin inducible gene family.
Computational
Description (TAIR10)
indole-3-acetic acid inducible 33 (IAA33); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT1G04550.2); Has 1006 Blast hits to 1006 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1006; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0DXeggNOG:ENOG410YQMWEMBL:AB493796EMBL:GU348647
EMBL:HM487946EMBL:HM487947EMBL:HM487950EMBL:HM487952
EMBL:HM487953EMBL:HM487955EMBL:HM487956EMBL:HM487957
EnsemblPlants:AT5G57420EnsemblPlants:AT5G57420.1entrez:835848ExpressionAtlas:C0SVU3
GeneID:835848GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009734Gramene:AT5G57420.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF7
InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT5G57420
OMA:RRFHQDNPANTHER:PTHR31734Pfam:PF02309Pfam:Q9FKM7
Pfscan:PS51745PhylomeDB:C0SVU3PROSITE:PS51745RefSeq:NP_200552.1
SMR:C0SVU3STRING:3702.AT5G57420.1SUPFAM:SSF54277TAIR:AT5G57420
tair10-symbols:IAA33UniGene:At.55603UniProt:C0SVU3UniProt:Q9FKM7
Coordinates (TAIR10) chr5:+:23270024..23270959
Molecular Weight (calculated) 18943.10 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.60
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)