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AT2G31730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, response to gibberellin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G05710.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:817730eggNOG:ENOG410IYP7eggNOG:ENOG410YRG3EMBL:AJ576041
EMBL:CP002685EnsemblPlants:AT2G31730EnsemblPlants:AT2G31730.1entrez:817730
Gene3D:4.10.280.10GeneID:817730GO:GO:0003700GO:GO:0006355
GO:GO:0009739Gramene:AT2G31730.1hmmpanther:PTHR16223hmmpanther:PTHR16223:SF41
HOGENOM:HOG000240890InterPro:IPR011598KEGG:ath:AT2G31730OMA:MEYSRDS
Pfscan:PS50888PhylomeDB:Q7XJU1PROSITE:PS50888Proteomes:UP000006548
RefSeq:NP_180732.3SMR:Q7XJU1STRING:3702.AT2G31730.1SUPFAM:SSF47459
TAIR:AT2G31730UniGene:At.38180UniProt:Q7XJU1
Coordinates (TAIR10) chr2:-:13487783..13488593
Molecular Weight (calculated) 17255.30 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.60
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYSRDSAEM MMETKRNVYS LEDNKIKRHK SSDLSFSSKE RKDKLAERIS ALQQLVSPYG KTDTASVLLE GMQYIQFLQE QVKVLSAPYL QATPSTTEEE
101: VEEYSLRSKG LCLVPLEYTS EVAQTNGADI WAPVKTPTSS HAFNLSSSNS PFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)