AT1G76510.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ARID/BRIGHT DNA-binding domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G20910.1); Has 538 Blast hits to 538 proteins in 87 species: Archae - 0; Bacteria - 4; Metazoa - 322; Fungi - 39; Plants - 149; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:28708927..28712498 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48042.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 434 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMADTEMQEQ DVPSGTKGVV EEPSELEKDL NSIERPKSPV PEDTTHTLDS DVHLSDAPIA NQIEANEEVG GQNSVDGRNG DVDQSEKKIT SDGGQEETTL 101: GESNPLKGDP SSPHVPEESV KKWKTWLLSD AEAREVDEAG APQDQEAFIK EVEAFNKENF LEFKAPKFYG QPLNCLKLWR AVIKLGGYDV VTTSKLWRQV 201: GESFHPPKTC TTVSWTFRIF YEKALLEYEK HLRQNGELNL PGSASLPSSG IEKEASSHQA SGSGRTRRDA AARAMQGWHS QRLLGSGEVT EPIVKEKGLN 301: STPKQKNLKN IGVQKQKTTT GMDLVFSHES EKQSTAEVID VGPPADWVKI NVRETKDCFE IFALVPGLLR EEVRVQSDPA GRLVIAGQPE QLDNPWGITP 401: FKKVVNFPAR IDPLHTSAVV SLHGRLFVRV PFEQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)