suba logo
AT3G18520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone deacetylase 15
Curator
Summary (TAIR10)
Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.
Computational
Description (TAIR10)
histone deacetylase 15 (HDA15); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, histone deacetylation; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9240 Blast hits to 9035 proteins in 1456 species: Archae - 223; Bacteria - 3186; Metazoa - 1508; Fungi - 639; Plants - 555; Viruses - 0; Other Eukaryotes - 3129 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G18520-MONOMERBioCyc:ARA:GQT-826-MONOMERBioGrid:6715EC:3.5.1.98
eggNOG:COG0123eggNOG:KOG1343EMBL:AB026658EMBL:AK118211
EMBL:AY086135EMBL:CP002686EnsemblPlants:AT3G18520EnsemblPlants:AT3G18520.1
entrez:821382ExpressionAtlas:Q8GXJ1Gene3D:3.40.800.20GeneID:821382
Genevisible:Q8GXJ1GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008270GO:GO:0032041hmmpanther:PTHR10625hmmpanther:PTHR10625:SF120
HOGENOM:HOG000225183InParanoid:Q8GXJ1InterPro:IPR000286InterPro:IPR001876
InterPro:IPR023801KEGG:ath:AT3G18520KO:K11407PANTHER:PTHR10625
PaxDb:Q8GXJ1Pfam:PF00850Pfam:Q8GXJ1PRIDE:Q8GXJ1
PRINTS:PR01270PRO:PR:Q8GXJ1PROSITE:PS01358ProteinModelPortal:Q8GXJ1
Proteomes:UP000006548RefSeq:NP_566612.1scanprosite:PS01358SMR:Q8GXJ1
STRING:3702.AT3G18520.2SUPFAM:SSF52768TAIR:AT3G18520tair10-symbols:ATHDA15
tair10-symbols:HDA15UniGene:At.38541UniProt:Q8GXJ1
Coordinates (TAIR10) chr3:+:6361605..6365367
Molecular Weight (calculated) 60023.30 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.14
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)