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AT3G45100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-Glycosyltransferase superfamily protein
Curator
Summary (TAIR10)
encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.
Computational
Description (TAIR10)
SETH2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PIGA, GPI anchor biosynthesis (InterPro:IPR013234), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G73160.1); Has 19927 Blast hits to 19902 proteins in 2481 species: Archae - 910; Bacteria - 15350; Metazoa - 164; Fungi - 171; Plants - 192; Viruses - 0; Other Eukaryotes - 3140 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G45100-MONOMERBioCyc:ARA:GQT-2844-MONOMERCAZy:GT4eggNOG:COG0438
eggNOG:KOG1111EMBL:AY039602EMBL:AY081726EMBL:CP002686
EMBL:KJ138805EnsemblPlants:AT3G45100EnsemblPlants:AT3G45100.1EnsemblPlants:AT3G45100.2
entrez:823646GeneID:823646GO:GO:0006506GO:GO:0016757
Gramene:AT3G45100.1Gramene:AT3G45100.2hmmpanther:PTHR12526hmmpanther:PTHR12526:SF232
InterPro:IPR001296InterPro:IPR013234KEGG:00563+2.4.1.198KEGG:ath:AT3G45100
KO:K03857OMA:FRRHDSIPfam:PF00534Pfam:PF08288
PhylomeDB:Q94BX4Proteomes:UP000006548Reactome:R-ATH-162710RefSeq:NP_566874.1
RefSeq:NP_850658.1SMR:Q94BX4STRING:3702.AT3G45100.1SUPFAM:SSF53756
TAIR:AT3G45100tair10-symbols:SETH2UniGene:At.1044unipathway:UPA00196
UniProt:Q94BX4
Coordinates (TAIR10) chr3:+:16504648..16506858
Molecular Weight (calculated) 50427.20 Da
IEP (calculated) 8.47
GRAVY (calculated) 0.11
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEPPKLRVL MVSDFFFPNF GGVENHIYYL SQCLLKLGHK VVVMTHAYGN RSGVRYMTGG LKVYYVPWRP FVMQTTFPTV YGTLPIVRTI LRREKITVVH
101: GHQAFSTLCH EALMHARTMG YKVVFTDHSL YGFADVGSIH MNKVLQFSLA DIDQAICVSH TSKENTVLRS GLSPAKVFMI PNAVDTAMFK PASVRPSTDI
201: ITIVVISRLV YRKGADLLVE VIPEVCRLYP NVRFVVGGDG PKHVRLEEMR EKHSLQDRVE MLGAVPHSRV RSVLVTGHIF LNSSLTEAFC IAILEAASCG
301: LLTVSTRVGG VPEVLPDDMV VLAEPDPDDM VRAIEKAISI LPTINPEEMH NRMKKLYSWQ DVAKRTEIVY DRALKCSNRS LLERLMRFLS CGAWAGKLFC
401: MVMILDYLLW RLLQLLQPDE DIEEAPDICL CHHRGVEVSE GLRKKIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)