AT3G45100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-Glycosyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SETH2; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PIGA, GPI anchor biosynthesis (InterPro:IPR013234), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G73160.1); Has 19927 Blast hits to 19902 proteins in 2481 species: Archae - 910; Bacteria - 15350; Metazoa - 164; Fungi - 171; Plants - 192; Viruses - 0; Other Eukaryotes - 3140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16504648..16506858 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50427.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEPPKLRVL MVSDFFFPNF GGVENHIYYL SQCLLKLGHK VVVMTHAYGN RSGVRYMTGG LKVYYVPWRP FVMQTTFPTV YGTLPIVRTI LRREKITVVH 101: GHQAFSTLCH EALMHARTMG YKVVFTDHSL YGFADVGSIH MNKVLQFSLA DIDQAICVSH TSKENTVLRS GLSPAKVFMI PNAVDTAMFK PASVRPSTDI 201: ITIVVISRLV YRKGADLLVE VIPEVCRLYP NVRFVVGGDG PKHVRLEEMR EKHSLQDRVE MLGAVPHSRV RSVLVTGHIF LNSSLTEAFC IAILEAASCG 301: LLTVSTRVGG VPEVLPDDMV VLAEPDPDDM VRAIEKAISI LPTINPEEMH NRMKKLYSWQ DVAKRTEIVY DRALKCSNRS LLERLMRFLS CGAWAGKLFC 401: MVMILDYLLW RLLQLLQPDE DIEEAPDICL CHHRGVEVSE GLRKKIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)