suba logo
AT4G17620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RAI1 like (InterPro:IPR013961); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZAFReggNOG:KOG1982EMBL:AK226891EMBL:AY074548
EnsemblPlants:AT4G17620EnsemblPlants:AT4G17620.1entrez:827482ExpressionAtlas:Q0WV80
GeneID:827482Genevisible:Q8RY73GO:GO:0004518GO:GO:0005829
Gramene:AT4G17620.1hmmpanther:PTHR12395hmmpanther:PTHR12395:SF9InterPro:IPR013961
iPTMnet:Q0WV80KEGG:00230+3.6.1.-KEGG:00332+3.6.1.-KEGG:00790+3.6.1.-
PaxDb:Q0WV80PaxDb:Q8RY73Pfam:PF08652Pfam:Q8RY73
PhylomeDB:Q0WV80PhylomeDB:Q8RY73PRIDE:Q0WV80PRO:PR:Q8RY73
ProteinModelPortal:Q0WV80RefSeq:NP_193498.2SMR:Q0WV80STRING:3702.AT4G17620.1
TAIR:AT4G17620UniGene:At.28784UniProt:Q0WV80UniProt:Q8RY73
Coordinates (TAIR10) chr4:+:9822005..9824859
Molecular Weight (calculated) 60384.50 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.83
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSPPKKNPM DDLFGEDSDN DSRSSRSKSS SSGNASSSSS SSSSSSSSSS AAGGDGEGDG GGADSGSASD SGSGSSGGKE EHGDDKVESY RSNDNGESGV
101: YPYEEEEEEE EDEKDLFGSD NEEYTKTPAI STYSIPVLPA GWSNDNHGGR GGMGRGRWSN GRGGPGLLPR PGPYPGRGGN RGGFGGRYQN YQRDERFVSE
201: LKLSKSKETL ARKQTNFQEP CELTCYSRVE GGEVIYDDQG LRLFKRHIGE EIGADLNQGY DTFIEKKDLG SEGFGDLLGS IRAKNISLDN IHFVTFRNNL
301: NKILGAAYNR HEPWEMGVHK RNGTIYLDVH KLPERPQSDL DRRRCYWGYC FESLATEDPG RAYGEEIHHV DANVEFCSVV RTKLGAHRVM MGAEMDCCDV
401: SDKGKRFYVE LKTTRELDDR TVDRFEREKL LKFWIQSFVA GVPYIVVGFR DDGGRLVRTE RLTTRDIAHR ARLKNYWQGG VCLAFADEVL CWLYGTVKEN
501: EDYILQFVHP FMRLELLQAQ SCPDAITNHV HLLQNPASPP PPPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)