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AT3G07780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1423)
Curator
Summary (TAIR10)
Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.
Computational
Description (TAIR10)
OBERON1 (OBE1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT5G48160.2); Has 8996 Blast hits to 6188 proteins in 768 species: Archae - 88; Bacteria - 1159; Metazoa - 3345; Fungi - 619; Plants - 512; Viruses - 79; Other Eukaryotes - 3194 (source: NCBI BLink).
Protein Annotations
BioGrid:5304eggNOG:ENOG410IGMYeggNOG:ENOG4110PA9EMBL:AC009176
EMBL:AC013483EMBL:AY045899EMBL:AY113947EMBL:CP002686
EMBL:DQ059085EnsemblPlants:AT3G07780EnsemblPlants:AT3G07780.1entrez:819969
GeneID:819969Genevisible:Q9S736GO:GO:0005634GO:GO:0008270
GO:GO:0009536GO:GO:0009793GO:GO:0010071GO:GO:0010078
GO:GO:0010468GO:GO:0010492GO:GO:0031347GO:GO:0042803
GO:GO:0046740GO:GO:0046982GO:GO:0080022Gramene:AT3G07780.1
hmmpanther:PTHR21736hmmpanther:PTHR21736:SF20HOGENOM:HOG000029805InParanoid:Q9S736
IntAct:Q9S736InterPro:IPR001965InterPro:IPR004082InterPro:IPR032535
InterPro:IPR032881iPTMnet:Q9S736KEGG:ath:AT3G07780ncoils:Coil
OMA:ICSHWTHPaxDb:Q9S736Pfam:PF07227Pfam:PF16312
Pfam:Q9S736PhylomeDB:Q9S736PIRSF:PIRSF025218PRIDE:Q9S736
PRINTS:PR01544PRO:PR:Q9S736PROSITE:PS01359ProteinModelPortal:Q9S736
Proteomes:UP000006548RefSeq:NP_566320.1SMART:SM00249STRING:3702.AT3G07780.1
TAIR:AT3G07780tair10-symbols:OBE1UniGene:At.25420UniProt:Q9S736
Coordinates (TAIR10) chr3:+:2485104..2486876
Molecular Weight (calculated) 64162.90 Da
IEP (calculated) 7.09
GRAVY (calculated) -0.56
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTSSGSNLP HQMLPPRQQL QTSLSLVSSD PHLSRSNSGI VRESPAESAS SQETWPTSKS IMGRKTDSGK TGPDSHDQHV IRHVSIADKV SLRDIARERL
101: DIVAERMHRL PEEYLEELKN GLKAILEGNG AQPIDEFMFL QKFVQTRSDL TSKTLVRAHR VQLEVLVVIN TGIQAFLHPN INLSQSSLIE IFVYKRCRNI
201: ACQNELPADG CPCEICANRK GFCNLCMCVI CNKFDFAVNT CRWIGCDVCS HWTHTDCAIR DGEISMGVSP KSVSGMGEML FKCRACNHTS ELLGWVKDVF
301: QHCAPNWDRE SLMKELDFVS RIFRGSEDTR GRKLFWKCEE LMEKIKGGLA EATAAKLILM FFQEIELDSP KSLESGEGGG TIAPQDACNR IAEVVKETLR
401: KMEIVGEEKT RMYKKARMGL EECEREVEEK AKQVAELQME RQKKKQQIEE VERIVRLKQA EAEMFQLKAN EAKVEAERLE RIVKAKKEKT EEEYASNYLK
501: LRLSEAEAEK EYLFEKIKEQ ESGGNGGEAS QAVMYSKIRE MLHGYNASSP RVDPRSNQRN PFRSNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)