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AT1G52770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G15570.1); Has 830 Blast hits to 821 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHVWeggNOG:ENOG410YFS1EMBL:AC019018EMBL:BT002492
EMBL:BT008757EMBL:CP002684EnsemblPlants:AT1G52770EnsemblPlants:AT1G52770.1
entrez:841710GeneID:841710Gramene:AT1G52770.1hmmpanther:PTHR32370
hmmpanther:PTHR32370:SF16HOGENOM:HOG000237573IntAct:Q9C941InterPro:IPR027356
KEGG:ath:AT1G52770ncoils:CoilOMA:NHARVTEPfam:PF03000
Pfscan:PS51649PhylomeDB:Q9C941PIR:G96568PROSITE:PS51649
Proteomes:UP000006548RefSeq:NP_175686.1STRING:3702.AT1G52770.1TAIR:AT1G52770
UniGene:At.37534UniProt:Q9C941
Coordinates (TAIR10) chr1:+:19656009..19657546
Molecular Weight (calculated) 50316.00 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.40
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKTSSPESA TISTKSPSTS TGKMECSWFD DGCILGIDYF VKTIAGIKSK GVRPDLIGSI IVHYASQWLP DLSDIVLNSD DQQPQPQQQS ESFSVTAFVM
101: KKRSFVETLI GIIPPERDSV PCDFLLRLLR TANMVGADAN YKAELEARIS WQLDQASLKE LMIPSFSHTC GTLLDVELMT RLVKKFAGLD NEGVKSGASL
201: IKVAKLVDSY LAEAALDGDL TLSEFISLVE ALPNHARVTE DGLYRAIDTY LKAHPNVTKQ ERKRLCGLID SNKLSMEASL HAAQNDRLPV RTIIQVLFSE
301: QAKLSHRSHN NIEWSGSSFS GVRSSPNPSG SHYSDSGPAR CTSKREINVQ QAEIRRLRED MAKLKCECEA MQTQLHKLVE KKGTCTSGNK GFFRWKKLGF
401: RSGLSVSVVE NTNGEEFGNN GEGENFEYVT QTPGNMMTKL VKGRTPSRWR KSMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)