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AT3G11090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LOB domain-containing protein 21
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 21 (LBD21); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 1016 Blast hits to 1011 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1016; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX7PeggNOG:ENOG4111BIHEMBL:AB473845EMBL:AC009991
EMBL:AC073395EMBL:CP002686EnsemblPlants:AT3G11090EnsemblPlants:AT3G11090.1
entrez:820280GeneID:820280Genevisible:Q9SRL8Gramene:AT3G11090.1
hmmpanther:PTHR31301hmmpanther:PTHR31301:SF24HOGENOM:HOG000237548InParanoid:Q9SRL8
InterPro:IPR004883KEGG:ath:AT3G11090ncoils:CoilOMA:PTCIFAP
PaxDb:Q9SRL8Pfam:PF03195Pfam:Q9SRL8Pfscan:PS50891
PhylomeDB:Q9SRL8PRO:PR:Q9SRL8PROSITE:PS50891Proteomes:UP000006548
RefSeq:NP_187720.1STRING:3702.AT3G11090.1TAIR:AT3G11090tair10-symbols:LBD21
UniGene:At.53264UniProt:Q9SRL8
Coordinates (TAIR10) chr3:+:3475036..3475533
Molecular Weight (calculated) 18160.80 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.10
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)