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AT1G17600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.508
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G40100.1); Has 24331 Blast hits to 16604 proteins in 714 species: Archae - 19; Bacteria - 1452; Metazoa - 3934; Fungi - 232; Plants - 17994; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410JT0KEMBL:CP002684EnsemblPlants:AT1G17600
EnsemblPlants:AT1G17600.1entrez:838336Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:838336GO:GO:0007165GO:GO:0016021
GO:GO:0043531Gramene:AT1G17600.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF169
InParanoid:F4I901InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713
InterPro:IPR027417InterPro:IPR032675iPTMnet:F4I901KEGG:ath:AT1G17600
OMA:MDALINIPaxDb:F4I901Pfam:PF00931Pfam:PF01582
Pfam:PF07725Pfscan:PS50104PRIDE:F4I901PROSITE:PS50104
ProteinModelPortal:F4I901Proteomes:UP000006548RefSeq:NP_173203.2SMART:SM00255
SMR:F4I901STRING:3702.AT1G17600.1SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT1G17600TMHMM:TMhelixUniGene:At.51651
UniProt:F4I901
Coordinates (TAIR10) chr1:-:6053026..6056572
Molecular Weight (calculated) 118582.00 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.10
Length 1049 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSSSAPRVS KYDVFLSFRG EDTRKTIVSH LYAALDSRGI VTFKDDQRLE IGDHISDELH RALGSSSFAV VVLSENYATS RWCLLELQLI MELMKEGRLE
0101: VFPIFYGVDP SVVRHQLGSF SLVKYQGLEM VDKVLRWREA LNLIANLSGV VSSHCVDEAI MVGEIARDIS RRVTLMHKID SGNIVGMKAH MEGLNHLLDQ
0201: ESNEVLLVGI WGMGGIGKTS IVKCLYDQLS PKFPAHCFIE NIKSVSKDNG HDLKHLQKEL LSSILCDDIR LWSVEAGCQE IKKRLGNQKV FLVLDGVDKV
0301: AQVHALAKEK NWFGPGSRII ITTRDMGLLN TCGVEVVYEV KCLDDKDALQ MFKQIAFEGG LPPCEGFDQL SIRASKLAHG LPSAIQAYAL FLRGRTASPE
0401: EWEEALGALE SSLDENIMEI LKISYEGLPK PHQNVFLHVV CLFNGDTLQR ITSLLHGPIP QSSLWIRVLA EKSLIKISTN GSVIMHKLVE QMGREIIRDD
0501: MSLARKFLRD PMEIRVALAF RDGGEQTECM CLHTCDMTCV LSMEASVVGR MHNLKFLKVY KHVDYRESNL QLIPDQPFLP RSLRLFHWDA FPLRALPSGS
0601: DPCFLVELNL RHSDLETLWS GTPMLKSLKR LDVTGSKHLK QLPDLSSITS LEELLLEQCT RLEGIPECIG KRSTLKKLKL SYRGGRRSAL RFFLRKSTRQ
0701: QHIGLEFPDA KVKMDALINI SIGGDITFEF RSKFRGYAEY VSFNSEQQIP IISAMSLQQA PWVISECNRF NSLRIMRFSH KENGESFSFD VFPDFPDLKE
0801: LKLVNLNIRK IPSGICHLDL LEKLDLSGND FENLPEAMSS LSRLKTLWLQ NCFKLQELPK LTQVQTLTLT NCRNLRSLAK LSNTSQDEGR YCLLELCLEN
0901: CKSVESLSDQ LSHFTKLTCL DLSNHDFETL PSSIRDLTSL VTLCLNNCKK LKSVEKLPLS LQFLDAHGCD SLEAGSAEHF EDIPNKEAHT RNDYFQETEM
1001: SSYVLKTQAT RNRQTIRLPK ITHAVMYVGI PICITLVAAL VILLLRVFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)