AT1G31540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46490.2); Has 15614 Blast hits to 11830 proteins in 459 species: Archae - 10; Bacteria - 472; Metazoa - 602; Fungi - 34; Plants - 14221; Viruses - 12; Other Eukaryotes - 263 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11291051..11293697 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89126.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.48 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 776 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSSHNW LYDVFLSFRG EDVRVTFRSH FLKELDRKLI TAFRDNEIER SHSLWPDLEQ AIKESRIAVV VFSKNYASSS WCLNELLEIV NCNDKIVIPV 101: FYHVDPSQVR HQIGDFGKIF ENTCKRQTDE EVKNQWKKAL TLVANMLGFD SAKWNDEAKM IEEIANDVLG KLLLTTPKDS EELVGIEDHI AEMSLLLQLE 201: SKEVRMVGIS GSSGIGKTTI ARALFKRLSR HFQGSTFIDR AFVSYSRNIY SGANPDDPNM KLQLQGHFLS EILGKKDIKI DDPAALEERL KHQKVLIIID 301: DLDDIMVLDT LVGQTQWFGY GSRIIVVTND KHFLIAHGID HIYEVSFPTD VHACQMLCQS AFKQNYAPKG FEDLVVDVVR HAGNFPLGLN LLGKYLRRRD 401: MEYWMDMLPR LENSLRIDGK IEKILRISYD GLESEDQEIF RHIACLFNHM EVTTIKSLLA DSDVSFALEN LADKSLIHVR QGYVVMHRSL QEMGRKIVRI 501: QSIDKPGERE FLVDPNDIHD ILNACTGTQK VLGISLDIRN IRELDVHERA FKGMSNLRFL EIKNFGLKED GLHLPPSFDY LPRTLKLLCW SKFPMRCMPF 601: GFRPENLVKL EMQYSKLHKL WEGVAPLTCL KEMDLHGSSN LKVIPDLSEA TNLEILNLKF CESLVELPSS IRNLNKLLNL DMLNCKSLKI LPTGFNLKSL 701: DRLNLYHCSK LKTFPKFSTN ISVLNLNLTN IEDFPSNLHL ENLVEFRISK EESDEKQWEE EKVSSSTLNI ISKLFP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)