suba logo
AT5G46500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB019223EMBL:CP002688EnsemblPlants:AT5G46500EnsemblPlants:AT5G46500.1
entrez:834693GeneID:834693Gramene:AT5G46500.1KEGG:ath:AT5G46500
OMA:LTITECIPhylomeDB:Q9FHF5Proteomes:UP000006548RefSeq:NP_199462.1
TAIR:AT5G46500UniGene:At.29952UniProt:Q9FHF5
Coordinates (TAIR10) chr5:+:18856454..18857787
Molecular Weight (calculated) 46968.60 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.54
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLSPTLTSH CSRLKCVSLH ISKLKHLEDA LFPACGALNR VELSGSSSGM KADNIDTASS SLPQVELDFR ECFNLDPETV LHQESIIFKY MLFPGKEEVP
101: SYFTYRTTGV SSLTIPLLHL PLSQPFFRFR VGALVTNVKH GKNIKVKCEF KDRFGNSFHV GSDDFYVYLL FTKSQKGSQM LTILDCCIPL NEGNASLAQG
201: NYYDHVDINI HITESLGSFG STSELKEWGI RLLEEDSSSA ENQLGNPNST LPHVSEAEEG NMGYYTPVQG LVNEIEHNGE SGDNNVETER STKHAAQRNY
301: YDHVDIDIEQ MDSDDDIEEW GRHLEDCHQR RIDMVIQTLC SMFVKPMKTM MDAIRLITTK SEETVMNSDI GRETDHFEEC EDSDISNESD QSEERGDSDD
401: DGINNETDLF EECGNSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)