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AT1G56540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G56510.1); Has 17561 Blast hits to 13901 proteins in 601 species: Archae - 16; Bacteria - 1092; Metazoa - 852; Fungi - 62; Plants - 15154; Viruses - 4; Other Eukaryotes - 381 (source: NCBI BLink).
Protein Annotations
EMBL:AC009323EMBL:CP002684EnsemblPlants:AT1G56540EnsemblPlants:AT1G56540.1
entrez:842107Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:842107GO:GO:0005524GO:GO:0007165GO:GO:0016021
GO:GO:0043531Gramene:AT1G56540.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20
HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT1G56540OMA:IHEFSESPfam:PF00931Pfam:PF01582
Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9FXA6PIR:A96607
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_176047.1SMART:SM00255
SMART:SM00382SMR:Q9FXA6STRING:3702.AT1G56540.1SUPFAM:SSF46785
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT1G56540
TMHMM:TMhelixUniGene:At.52233UniProt:Q9FXA6
Coordinates (TAIR10) chr1:+:21181664..21185306
Molecular Weight (calculated) 125016.00 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.21
Length 1096 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSSSR RTWRYNVFTS FHGPDVRKTF LSHLRKQFNY NGITMFDDQR IERSQIIAPA LTEAIRESRI AIVLLSKNYA SSSWCLDELL EILDCKEQLG
0101: QIVMTVFYGV HPSDVRKQTG DFGIAFNETC ARKTEEQRQK WSQALTYVGN IAGEHFQNWD NEAKMIEKIA SDVSDKLNTT PSRDFDGMIG LEAHLRKIES
0201: LLDLDYDGAK IVGISGPAGI GKSTIARALH SVLSKRFQHN CFMDNLHESY KIGLVEYGLR LRLQEQLLSK ILNLDGIRIA HLGVIRERLH DQKVLIILDD
0301: VESLDQLDAL ANIEWFGPGS RVIVTTENKE ILQQHGISDI YHVGFPSSKE ALMIFCLSAF RQLSPPDRFM NLAAEVAKLC GYLPLALHVL GSSLRGKNYS
0401: DWIEELPRLQ TCLDGRIESV LKVGYESLHE KDQALFLYIA VFFNYQHADY VTSMLAKTNL NVRLGLKILA NRHLIHIGHG AKGIVVMHRL LKVMARQVIS
0501: KQEPWKRQIL VDTQEISYVL ENAEGNGSIA GISFDVGEIN KLTISAKAFE RMHNLLLLKV YDPWFTGKGQ VHIPEEMDFL PRLSLLRWDA YTRKTLPRRF
0601: CPENLVELNM PDSQLEKLWE GTQLLANLKT MKLSRSSRLK ELPNLSNAKN LERLDLHECV ALLELPSSIS NLHKLYFLET NHCRRLQVIP TLTNLVSLED
0701: IKMMGCLRLK SFPDIPANII RLSVMETTIA EFPASLRHFS HIESFDISGS VNLKTFSTLL PTSVTELHID NSGIESITDC IKGLHNLRVL ALSNCKKLTS
0801: LPKLPSSLKW LRASHCESLE RVSEPLNTPN ADLDFSNCFK LDRQARQAIF QQRFVDGRAL LPGRKVPALF DHRARGNSLT IPNSASYKVC VVISTEFDHK
0901: DRDSTIVSRL LCRCIVISNS VNSTDKEFVL TDVYKYRMEH LFIFHMVNPV SFFYPSSREI VLEFSSIHKH FDIVECGVQI LTDETERNNN VGSADEDDLW
1001: YIHEFSESLR KEEKDKDSVA KSESCGASEK EDEEATKDKD EDIAEHSDSE SISENRPRKR TMISATTNLK KWFLCLFLFF FFSFAFVKFS IYFDLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)