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AT2G15042.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 56306 Blast hits to 17936 proteins in 777 species: Archae - 23; Bacteria - 1630; Metazoa - 5114; Fungi - 406; Plants - 45797; Viruses - 0; Other Eukaryotes - 3336 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002685EnsemblPlants:AT2G15042
EnsemblPlants:AT2G15042.1entrez:7922469Gene3D:3.80.10.10GeneID:7922469
GO:GO:0016021Gramene:AT2G15042.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF37
InParanoid:F4IHG3InterPro:IPR001611InterPro:IPR032675KEGG:ath:AT2G15042
OMA:SLANCEDPaxDb:F4IHG3Pfam:PF00560Pfam:PF13855
PRIDE:F4IHG3ProteinModelPortal:F4IHG3Proteomes:UP000006548RefSeq:NP_001154519.1
SMR:F4IHG3STRING:3702.AT2G15042.1SUPFAM:SSF52058TAIR:AT2G15042
TMHMM:TMhelixUniGene:At.27735UniProt:F4IHG3
Coordinates (TAIR10) chr2:+:6510165..6512335
Molecular Weight (calculated) 61367.30 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.24
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGSLSQKLY RPPWTGRGSI VHHVAGGAYV WRTDGPISQE LDSAIGLVHQ FTIGYESLNE WSKATNGLRN QIRILAKAGK RRKLEYTVAG HRDVRDWVSQ
101: ILYCYRGLTC PDAVTWLVMD ATNFGLRESF QQHFHRFPKI NGTFILATIY ELFFWRQQQF HGKSSSFHMC IALSSNDLCD NKFNGSIPRC MGNFSSTLQA
201: LHLRKNHLSG VFPENISESL KSLDVGHNQL VGKLPRSLVR ISSLEVLNVE NNKINDTFPF WLSSLEELQV LVLRSNAFHG PMQQTRFPNL RIIDVSHNHF
301: NGTLPSDFFV NWTVMFLLGE NEDQFNGEYM GTSYYSDSIV VMNKGLEMEM VRILKIFTSV DFSRNKFEGE IPKSIGLLKE LHVLNLSSNT FTGHIPSSMG
401: KLRELESLDV AQNKLSGDIP QDLGDLSYLA YMNFSHNQLV GPLPGGTQFL TQNCSSFEEN AGHFGPSLEK VCDIHGKTMQ ESEMPGSEED EEEVISWIAA
501: TIGFIPGIAF GLMMGYILVC YKPEWFMNVF GKNKSRSTSS TTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)