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AT1G56520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.810
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G56510.1); Has 16802 Blast hits to 12753 proteins in 523 species: Archae - 12; Bacteria - 1032; Metazoa - 1160; Fungi - 60; Plants - 14137; Viruses - 16; Other Eukaryotes - 385 (source: NCBI BLink).
Protein Annotations
EMBL:AC058785EMBL:CP002684EnsemblPlants:AT1G56520EnsemblPlants:AT1G56520.1
entrez:842105ExpressionAtlas:Q9C7W9Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:842105GO:GO:0005524GO:GO:0007165
GO:GO:0043531Gramene:AT1G56520.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20
HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593
InterPro:IPR011713InterPro:IPR027417InterPro:IPR032675Pfam:PF00931
Pfam:PF01582Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9C7W9
PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_176044.1SMART:SM00255
SMART:SM00382SMR:Q9C7W9SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT1G56520UniGene:At.42765UniProt:Q9C7W9
Coordinates (TAIR10) chr1:-:21175614..21178920
Molecular Weight (calculated) 101819.00 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.11
Length 897 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSSPRN WRYNVFTSFH GPDVRIKFLS HLRQQFIYNG ITMFDDNGIE RSQIIAPALK KAIGESRIAI LLLSKNYASS SWSLDELLEI LKCKEDIGQI
101: VMTVFYEVDP SDVRNQTGDF GIAFKETCAH KTEEERQKWT QALTYVGNIA GEDFKHWPNE AKMIEKIARD VSDILNVTPC RDFDGMVGLN DHLREMESLL
201: DLKNDGVKIV GISGPAGIGK STIATALHGR LSNMFQRTCF VDNLRESYKI GLDEYRLKLH LQQQLLAYVL NQDKIRVGHL SVMKERLDDL RVLIILDDVE
301: HLYQLEALAD IRWFGPGSRV IVTTENREIL LQHGIKDIYH VGFPSEGEAL MIFCLSAFRQ PSPPYGFLKL TYEVASICGN LPLGLHVLGT LLWGKSQADW
401: IEELPRLKDC LDGRIESVLK VGYESLYEKD QALFLLIAVY FNYDYVDYVT SMLENTNVLD VRLGLKKLAN RCLIQIDIDH NRKSRVVMNR LLQVMAREVI
501: SKQKISKRKI LEDPQDICYV LEEAKGKGSA LGLSLDVAEI KELVINKKAF KKMCNLLILK VFNGTDPRDS KLHVPEEMEL PSSIRLLHWE AYPRKSFRFG
601: PENLVTLNME YSELEKLWKG TQPLANLKEM NLCGSSCLKE LPDLSKAANL ERLDVAECNA LVEIPSSVAN LHKIVNLHME SCESLEVIPT LINLASLKII
701: NIHDCPRLKS FPDVPTSLEE LVIEKTGVQE LPASFRHCTG VTTLYICSNR NLKTFSTHLP MGLRKLDLSN CGIEWVTDSI KDLHNLYYLK LSGCKRLVSL
801: PELPCSLECL FAEDCTSLER VSDSLNIPNA QFNFIKCFTL DREARRAIIQ QSFVHGNVIL PAREVLEEVD YRARGNCLTI PPSAFNRFKV CVVLSIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)