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AT1G66090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G56540.1); Has 7229 Blast hits to 7084 proteins in 242 species: Archae - 0; Bacteria - 86; Metazoa - 1; Fungi - 7; Plants - 7129; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
EMBL:AC026480EMBL:AF360148EMBL:AY113882EMBL:CP002684
EnsemblPlants:AT1G66090EnsemblPlants:AT1G66090.1entrez:842923Gene3D:3.40.50.10140
Gene3D:3.40.50.300GeneID:842923GO:GO:0005524GO:GO:0007165
GO:GO:0043531Gramene:AT1G66090.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20
InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593InterPro:IPR027417
KEGG:ath:AT1G66090OMA:GICDIYHPfam:PF00931Pfam:PF01582
Pfscan:PS50104PhylomeDB:Q9C515PIR:E96685PROSITE:PS50104
Proteomes:UP000006548RefSeq:NP_176783.1SMART:SM00255SMART:SM00382
SMR:Q9C515STRING:3702.AT1G66090.1SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT1G66090UniGene:At.17581UniProt:Q9C515
Coordinates (TAIR10) chr1:+:24602221..24604573
Molecular Weight (calculated) 48026.60 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.21
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTSSSSS SSSSSLSSPS PCTWRYMTFT SFHGPDVRNT FLSHLRKQFN TNGITMFDDQ RMERSQTLAP TLTQAIRESK IYIVLLSKNY ASSSWCLDEL
101: LEILNCKEKR GQRVMTIFYG VNPSDVRKQT GEFGIAFNET CARKTEEERR KWSHALTCVG NITGVHVQDR DDEANMIEKI ATDVSEKLNA TESKDFDEMV
201: GIKAHLTKIE SLLSLDYDKV KIVGISGPAG IGKSTIARAL HNLLSSSFHL SCFMENLISQ SNPHSSLEYS SKLSLQEQLL SQVLNEKDIR IRHLGAIQER
301: LHDQRVLIIL DDVTSLEQLE VLANIKWYGP GSRIIVITKK KDILVQHGIC DIYHVGFPTD ADALKIFCLS AYRQTSPPDG SMKIHECEMF IKICGNLPLH
401: LHVLGSALRG RSYGRVQSLC NLVSLADFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)