AT3G28890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.976 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 43 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 43 (RLP43); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, inflorescence meristem, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 102583 Blast hits to 30031 proteins in 1080 species: Archae - 49; Bacteria - 8204; Metazoa - 22065; Fungi - 946; Plants - 63122; Viruses - 5; Other Eukaryotes - 8192 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10896706..10898841 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79798.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 711 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGFWNSKST IRITLSFIFL FISQFSDVLA APTRHLCRPE QKDALLKFKT EFEIGKPCRY CTVYCIEPHP KTESWGNNNS DCCNWEGVTC NAKSGEVIEL 101: DLSCSYLHGR FHSNSSIRNL HFLTTLDLSF NDFKGQIMSS IENLSHLTYL DLSFNHFSGQ VPSSIGNLSH LTFLDLYCNQ FSGQVPSSIG NLSHLTTLEL 201: SFNRFFGQFP SSIGGLSHLT TLNLFVNNFL GQIPSSIGNL SNLTSLYLCK NNFSGQIPSF IGNLSQLTRL DLSSNNFFGE IPGWLWTLPN LFYVNLSYNT 301: FIGFQRPNKP EPSMGHLLGS NNNFTGKIPS FICELRSLET LDLSDNNFSG LIPRCMGNLK SNLSHLNLRQ NNLSGGLPKH IFEILRSLDV GHNQLVGKLP 401: RSLRFFSTLE VLNVESNRIN DTFPFWLTSL PKLQVLVLRS NAFHGPIHEA SFLKLRIIDI SHNHFNGTLP SDYFVKWSAM SSLGTDEDRS NANYMGSVYY 501: QDSMVLMNKG VESELIRILT IYTALDFSGN KFEGEIPKSI GLLKELLVLN LSNNAFTGHI PSSMGKLTAL ESLDVSQNKL YGEIPQEIGN LSFLSCMNFS 601: HNQLAGLVPG GQQFLTQPCS SFEDNLGLFG STLEEDCRDI HTPASHQQYK TPETEEEDEE VISWIAAAIG FIPGIVLGLT IGYILVFYKP EWFIKTFGRN 701: NCRRRSTTTT H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)