AT5G27060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 53 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 53 (RLP53); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:9522534..9525407 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106681.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 957 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGFWNSKSI IRITLSFIFL FICHFLDVLA APTRNLCRPE QRDALLAFKN EFEIGKPSPD HCKIYGIESP RKTDSWGNNS DCCNWEGVTC NAKSGEVIEL 101: DLSCSSLHGR FHSNSSIRNL HFLTTLDLSF NDFKGQITSS IENLSHLTYL DLSSNHFSGQ ILNSIGNLSR LTYLNLFDNQ FSGQAPSSIC NLSHLTFLDL 201: SYNRFFGQFP SSIGGLSHLT TLSLFSNKFS GQIPSSIGNL SNLTTLDLSN NNFSGQIPSF IGNLSQLTFL GLFSNNFVGE IPSSFGNLNQ LTRLYVDDNK 301: LSGNFPNVLL NLTGLSLLSL SNNKFTGTLP PNITSLSNLM DFDASDNAFT GTFPSFLFTI PSLTYIRLNG NQLKGTLEFG NISSPSNLYE LDIGNNNFIG 401: PIPSSISKLV KLFRLDISHL NTQGPVDFSI FSHLKSLLDL NISHLNTTTR IDLNYFLSYF KRLLLLDLSG NHVSATNKSS VSDPPSQLIQ SLYLSGCGIT 501: EFPEFVRTQH ELGFLDISNN KIKGQVPDWL WRLPILYYVN LSNNTLIGFQ RPSKPEPSLL YLLGSNNNFI GKIPSFICGL RSLNTLDLSD NNFNGSIPRC 601: MGHLKSTLSV LNLRQNHLSG GLPKQIFEIL RSLDVGHNQL VGKLPRSLSF FSTLEVLNVE SNRINDTFPF WLSSLPKLQV LVLRSNAFHG PIHEATFPEL 701: RIIDISHNRF NGTLPTEYFV KWSAMSSLGK NEDQSNEKYM GSGLYYQDSM VLMNKGVAME LVRILTIYTA VDFSGNRFEG EIPKSIGLLK ELLVLSLSNN 801: AFSGHMPSSM GNLTALESLD VSKNKLTGEI PQELGDLSFL AYMNFSHNQL AGLVPGGQQF LTQNCSAFED NLGLFGSSLE EVCRDIHTPA SHQQFETPET 901: EEEDEDLISW IAAAIGFGPG IAFGLMFGYI LVSYKPEWFM NPFDRNNRRQ KRHKTTH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)