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AT3G11000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DCD (Development and Cell Death) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DCD (Development and Cell Death) domain protein; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01660.1); Has 325 Blast hits to 316 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 6; Plants - 296; Viruses - 1; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYYZeggNOG:ENOG4111C3PEMBL:BT020262EMBL:BT020449
EMBL:CP002686EnsemblPlants:AT3G11000EnsemblPlants:AT3G11000.1entrez:820271
ExpressionAtlas:Q5PP35GeneID:820271Gramene:AT3G11000.1hmmpanther:PTHR10857
hmmpanther:PTHR10857:SF31InterPro:IPR013989Pfam:PF10539Pfscan:PS51222
PROSITE:PS51222Proteomes:UP000006548RefSeq:NP_187711.3SMART:SM00767
STRING:3702.AT3G11000.2TAIR:AT3G11000UniGene:At.22181UniGene:At.39822
UniProt:Q5PP35
Coordinates (TAIR10) chr3:+:3448442..3450283
Molecular Weight (calculated) 53881.30 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.63
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MCVRNLKKGD LCGVIFGCKF STIKECYAKN LFGLPAPHMA YIKNIDPGLT LFLFNYSDRT LHGIFEAASE GKLNIDSKAW SPNGTDPSPY PAQVKVRVRV
101: RCEPLPEEKF SPVIVENYND DKMFWFELDR GQTNKLLRLF KPSPSVRPPT ISRDAVPPPR KPIPASSLAQ IGDSGATRID KWSNLFKSSD ESTKNKEKDS
201: KEGALGAGSR LVNLGKTKEW ETASNNADER RTQPSVSQSG TSYSSALSHM TASSTQEKKN SITNEGSSQA CKGVENPWTS AARVPPIHQD SGGFRNAAME
301: GEDVKVNAYH HQQNLHPTQK GTSTTANNRI VPSISKEEPA EDTYSFIDWD ATSSFQVHLD GLNKILEDPK DKECFKSLVG NTGQASSSMV PNSWEDDFEE
401: RSIAKSPCGS SYVSAGTGDV VDDIGRMDNF KMEIGSPTVV DILTELLAEV KELKHTQLKQ AERMITLEME LLETRRDILR LKGSNGSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)