AT4G31610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcriptional factor B3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REPRODUCTIVE MERISTEM 1 (REM1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15317700..15319776 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58391.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADPPHFSLF QQKFRTGDKP FLTLDADFLM NHTKVLLKSD ASDKVWKVKL DGGRLSEGWE EFACDQKFRD GDVLVFKHHG DEVFHVAVVS PSVSGDIRNA 101: SSSQVITEDT YIDVDDVDDD DYGQDDEDDD DDDDEGEDNI ENISEKTDKR QEADSSSDHS GFITARVTRY SLLHDRLDLS RNFTLLFGGH QKTCEIDVVD 201: EQGRRWTMKL AKNISSGVFY IRLGWGNFCC ANGLTQGDLC KFKLFQNEER PVLWLCPQES GNGRKEKRTF DEVSKGKEKK TPSPFLIVKY TPSRETTGQL 301: SLPVSFTRNN SINKTGEVIL LNQDGRKWSS YLQITGLGRG AGSEWFYLRR GWREMCEANG VGVNDSFKLE LVWEGANPMF KFCSKIENHE YKGKGNQRTR 401: KKRACETAPQ PRNVKKTPRL GVEGPVYQVD EERGHTQVSN RTNTISGNLQ RLLPPSCSVS DQVANVKQGI VDSLNTVRQC RTELETSEQN LQASLLAIDA 501: LGERIWGISK ILSSNLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)