AT4G14080.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : O-Glycosyl hydrolases family 17 protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
maternal effect embryo arrest 48 (MEE48); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: pollen exine formation, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G23770.1); Has 2783 Blast hits to 2708 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2773; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:8118697..8120292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53474.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 478 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLLAFFLFT ILVFSSSCCS ATRFQGHRYM QRKTMLDLAS KIGINYGRRG NNLPSPYQSI NFIKSIKAGH VKLYDADPES LTLLSQTNLY VTITVPNHQI 101: TALSSNQTIA DEWVRTNILP YYPQTQIRFV LVGNEILSYN SGNVSVNLVP AMRKIVNSLR LHGIHNIKVG TPLAMDSLRS SFPPSNGTFR EEITGPVMLP 201: LLKFLNGTNS YFFLNVHPYF RWSRNPMNTS LDFALFQGHS TYTDPQTGLV YRNLLDQMLD SVLFAMTKLG YPHMRLAISE TGWPNFGDID ETGANILNAA 301: TYNRNLIKKM SASPPIGTPS RPGLPIPTFV FSLFNENQKS GSGTQRHWGI LHPDGSPIYD VDFTGQTPLT GFNPLPKPTN NVPYKGQVWC VPVEGANETE 401: LEETLRMACA QSNTTCAALA PGRECYEPVS IYWHASYALN SYWAQFRNQS IQCFFNGLAH ETTTNPGNDR CKFPSVTL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)