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AT5G52160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G62080.1); Has 187 Blast hits to 187 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6YUeggNOG:ENOG410Z2QHEMBL:AB025603EMBL:AY088450
EMBL:BT024656EMBL:CP002688EMBL:DQ447066EnsemblPlants:AT5G52160
EnsemblPlants:AT5G52160.1entrez:835292GeneID:835292GO:GO:0008233
Gramene:AT5G52160.1hmmpanther:PTHR35501hmmpanther:PTHR35501:SF2HOGENOM:HOG000243255
InterPro:IPR016140KEGG:ath:AT5G52160OMA:CCNALEAPhylomeDB:Q9LTK4
Proteomes:UP000006548RefSeq:NP_200029.1SMART:SM00499SMR:Q9LTK4
SUPFAM:SSF47699TAIR:AT5G52160TMHMM:TMhelixUniGene:At.29632
UniProt:Q9LTK4
Coordinates (TAIR10) chr5:+:21195140..21195430
Molecular Weight (calculated) 10069.30 Da
IEP (calculated) 6.20
GRAVY (calculated) 0.45
Length 96 amino acids
Sequence (TAIR10)
(BLAST)
1: MAASSKYSSM SFMKVAMMVA LVLVVAATVV DGQSCNAQLS TLNVCGEFVV PGADRTNPSA ECCNALEAVP NECLCNTFRI ASRLPSRCNI PTLSCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)