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AT1G62940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : acyl-CoA synthetase 5
Curator
Summary (TAIR10)
encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.
Computational
Description (TAIR10)
acyl-CoA synthetase 5 (ACOS5); CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate:CoA ligase 2 (TAIR:AT3G21240.1); Has 80303 Blast hits to 72777 proteins in 3663 species: Archae - 1209; Bacteria - 52830; Metazoa - 3472; Fungi - 4003; Plants - 2782; Viruses - 1; Other Eukaryotes - 16006 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G62940-MONOMERBioCyc:MetaCyc:AT1G62940-MONOMEREC:6.2.1.-eggNOG:COG0318
eggNOG:KOG1176EMBL:AC011000EMBL:AY250836EMBL:AY376734
EMBL:CP002684EnsemblPlants:AT1G62940EnsemblPlants:AT1G62940.1entrez:842596
GeneID:842596Genevisible:Q9LQ12GO:GO:0001676GO:GO:0004467
GO:GO:0005524GO:GO:0005737GO:GO:0005783GO:GO:0031956
GO:GO:0046949GO:GO:0080110Gramene:AT1G62940.1gramene_pathway:6.2.1.-
gramene_pathway:6.2.1.3gramene_pathway:PWY-5143gramene_pathway:PWY-6733hmmpanther:PTHR24096
hmmpanther:PTHR24096:SF116HOGENOM:HOG000230009InParanoid:Q9LQ12InterPro:IPR000873
InterPro:IPR025110KEGG:ath:AT1G62940KO:K01904OMA:TPAEHFV
PaxDb:Q9LQ12Pfam:PF00501Pfam:PF13193Pfam:Q9LQ12
PhylomeDB:Q9LQ12PIR:B96654PRIDE:Q9LQ12PRO:PR:Q9LQ12
ProteinModelPortal:Q9LQ12Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_176482.1
SMR:Q9LQ12STRING:3702.AT1G62940.1SUPFAM:SSF56801TAIR:AT1G62940
tair10-symbols:ACOS5TMHMM:TMhelixUniGene:At.70358UniProt:Q9LQ12
Coordinates (TAIR10) chr1:+:23310554..23312747
Molecular Weight (calculated) 59171.90 Da
IEP (calculated) 5.11
GRAVY (calculated) 0.06
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)