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AT4G34850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.758
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chalcone and stilbene synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LESS ADHESIVE POLLEN 5 (LAP5); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, pollen exine formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, anther, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G34850-MONOMERBioCyc:MetaCyc:AT4G34850-MONOMEREC:2.3.1.-eggNOG:COG3424
eggNOG:ENOG410IIN2EMBL:AL079347EMBL:AL161586EMBL:AY085918
EMBL:CP002687EMBL:DQ062353EMBL:DQ062354EMBL:DQ062355
EMBL:DQ062356EMBL:DQ062357EMBL:DQ062359EMBL:DQ062360
EMBL:DQ062362EMBL:DQ062365EMBL:DQ062366EMBL:DQ062369
EMBL:DQ062370EMBL:DQ062371EMBL:DQ062372EMBL:DQ062373
EMBL:DQ062374EMBL:DQ062375EMBL:DQ062377EMBL:DQ062378
EMBL:DQ062379EMBL:DQ062381EMBL:DQ062382EMBL:DQ062383
EMBL:DQ062384EMBL:DQ446894EMBL:DQ653244EnsemblPlants:AT4G34850
EnsemblPlants:AT4G34850.1entrez:829637Gene3D:3.40.47.10GeneID:829637
Genevisible:Q8LDM2GO:GO:0005783GO:GO:0009813GO:GO:0010584
GO:GO:0030639GO:GO:0080110GO:GO:0090439Gramene:AT4G34850.1
gramene_pathway:2.1.1.-gramene_pathway:PWY-6733hmmpanther:PTHR11877hmmpanther:PTHR11877:SF25
HOGENOM:HOG000245460InterPro:IPR001099InterPro:IPR011141InterPro:IPR012328
InterPro:IPR016039KEGG:ath:AT4G34850OMA:CVRSWGGPaxDb:Q8LDM2
Pfam:PF00195Pfam:PF02797Pfam:Q8LDM2PhylomeDB:Q8LDM2
PIR:T10231PIRSF:PIRSF000451PRO:PR:Q8LDM2ProteinModelPortal:Q8LDM2
Proteomes:UP000006548RefSeq:NP_567971.1SMR:Q8LDM2STRING:3702.AT4G34850.1
SUPFAM:SSF53901TAIR:AT4G34850tair10-symbols:LAP5UniGene:At.3503
UniGene:At.69687UniPathway:UPA00154UniProt:Q8LDM2
Coordinates (TAIR10) chr4:+:16608349..16609720
Molecular Weight (calculated) 42984.90 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.17
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)