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AT1G35420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dienelactone hydrolase (InterPro:IPR002925); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G23600.1); Has 2493 Blast hits to 2492 proteins in 784 species: Archae - 17; Bacteria - 1670; Metazoa - 72; Fungi - 315; Plants - 235; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU0JeggNOG:ENOG410Y5ADEMBL:AC023064EMBL:AK175170
EMBL:CP002684EnsemblPlants:AT1G35420EnsemblPlants:AT1G35420.1entrez:840434
ESTHER:arath-F12A4.4ExpressionAtlas:Q9C8P5Gene3D:3.40.50.1820GeneID:840434
GO:GO:0016787Gramene:AT1G35420.1hmmpanther:PTHR17630hmmpanther:PTHR17630:SF45
InterPro:IPR002925InterPro:IPR029058Pfam:PF01738PhylomeDB:Q9C8P5
PIR:C86475Proteomes:UP000006548Reactome:R-ATH-211945RefSeq:NP_564458.1
SMR:Q9C8P5STRING:3702.AT1G35420.2SUPFAM:SSF53474TAIR:AT1G35420
UniGene:At.20399UniProt:Q9C8P5
Coordinates (TAIR10) chr1:+:13026320..13027463
Molecular Weight (calculated) 34169.10 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.32
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASLASLSS LAKAGAPRSL FNRHGSHRLP PPQIIPLASS IKKHITTSFY RRGSSLKNIY ALETSDGAIN VEVDDDEEEE ACELVNGTEV SVDGVEGYLL
101: TAVKNNNGTG LLLLSDVFGF QDSATRDFAY RVACNGYNVL VPDLFRGDPW SKNRPKSEYE EWRRGHDPNR IRQDTTTFTK WMVEEFAAAG ISKKLGVMGF
201: CFGGGRVVDV LATDESGYFS TGVSFYGTRI DSAVAGDVKV PVLFIAGDRD PLCEVKGLYE IEEKIGEGSK VVVYEGRGHG FVHRPETPED DRDAEEAFAL
301: MRNWLHHHLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)