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AT4G25910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NFU domain protein 3
Curator
Summary (TAIR10)
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.
Computational
Description (TAIR10)
NFU domain protein 3 (NFU3); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0694eggNOG:KOG2358EMBL:AK317114EMBL:AL161564
EnsemblPlants:AT4G25910EnsemblPlants:AT4G25910.1entrez:828697ExpressionAtlas:B9DGD5
GeneID:828697Genevisible:Q84RQ7GO:GO:0005506GO:GO:0016226
GO:GO:0051536Gramene:AT4G25910.1hmmpanther:PTHR11178hmmpanther:PTHR11178:SF25
InterPro:IPR001075KEGG:ath:AT4G25910MINT:MINT-8070243OMA:IMSVEQF
PaxDb:B9DGD5Pfam:PF01106Pfam:Q84RQ7PhylomeDB:B9DGD5
PRIDE:B9DGD5ProDom:PD002830ProteinModelPortal:B9DGD5Proteomes:UP000006548
RefSeq:NP_567735.1SMR:B9DGD5SMR:Q84RQ7STRING:3702.AT4G25910.1
SUPFAM:SSF117916TAIR:AT4G25910tair10-symbols:ATCNFU3tair10-symbols:NFU3
UniGene:At.32223UniProt:B9DGD5UniProt:Q84RQ7
Coordinates (TAIR10) chr4:+:13164128..13165094
Molecular Weight (calculated) 25658.20 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.05
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVSGQTRI TTMNLSLSTA EKNPNFRSSL LNSKNAISDT LGVSSKCSTF LRGQFQRIHF SWLQHTRPLR KRTVFGHVSC VMPLTEENVE RVLDEVRPSL
101: MADGGNVALH EIDGLVVVLK LQGACGSCPS SSMTLKMGIE SRLRDKIPEI MSVEQFLESE TGGLELNDEN IEKVLSELRP YLSGTGGGGL ELVEIDGYVV
201: KVRLTGPAAG VMTVRVALTQ KLRETIPSIG AVQLLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)