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AT4G14540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B3 (NF-YB3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B2 (TAIR:AT5G47640.1); Has 1532 Blast hits to 1532 proteins in 250 species: Archae - 0; Bacteria - 1; Metazoa - 503; Fungi - 375; Plants - 529; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioGrid:12398eggNOG:COG2036eggNOG:KOG0869EMBL:AK117818
EMBL:AL161539EMBL:BT003684EMBL:CP002687EMBL:Z97336
EnsemblPlants:AT4G14540EnsemblPlants:AT4G14540.1entrez:827101Gene3D:1.10.20.10
GeneID:827101Genevisible:O23310GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0043565Gramene:AT4G14540.1hmmpanther:PTHR11064
hmmpanther:PTHR11064:SF27HOGENOM:HOG000211832InParanoid:O23310IntAct:O23310
InterPro:IPR003956InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT4G14540
OMA:NESGGHRPaxDb:O23310Pfam:O23310Pfam:PF00808
PhylomeDB:O23310PIR:G71407PRIDE:O23310PRO:PR:O23310
PROSITE:PS00685ProteinModelPortal:O23310Proteomes:UP000006548Reactome:R-ATH-2426168
RefSeq:NP_193190.1scanprosite:PS00685SMR:O23310STRING:3702.AT4G14540.1
SUPFAM:SSF47113TAIR:AT4G14540tair10-symbols:NF-YB3UniGene:At.33269
UniProt:O23310
Coordinates (TAIR10) chr4:+:8344663..8345148
Molecular Weight (calculated) 17187.00 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.72
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)