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AT1G54160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit A5
Curator
Summary (TAIR10)
Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.
Computational
Description (TAIR10)
nuclear factor Y, subunit A5 (NF-YA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: response to water deprivation, negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A6 (TAIR:AT3G14020.1); Has 683 Blast hits to 683 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 133; Plants - 381; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioGrid:27081eggNOG:COG5224eggNOG:KOG1561EMBL:AC006577
EMBL:AF386957EMBL:AY081445EMBL:CP002684EnsemblPlants:AT1G54160
EnsemblPlants:AT1G54160.1entrez:841856GeneID:841856Genevisible:Q9SYH4
GO:GO:0003677GO:GO:0003700GO:GO:0006351GO:GO:0009414
GO:GO:0009738GO:GO:0009785GO:GO:0009793GO:GO:0010262
GO:GO:0016602GO:GO:0045892GO:GO:0048316Gramene:AT1G54160.1
hmmpanther:PTHR12632hmmpanther:PTHR12632:SF12HOGENOM:HOG000239782InParanoid:Q9SYH4
InterPro:IPR001289InterPro:IPR018362KEGG:ath:AT1G54160KO:K08064
OMA:YPSTHHAPANTHER:PTHR12632PaxDb:Q9SYH4Pfam:PF02045
Pfam:Q9SYH4Pfscan:PS51152PhylomeDB:Q9SYH4PIR:G96582
PRIDE:Q9SYH4PRINTS:PR00616PRO:PR:Q9SYH4PROSITE:PS00686
PROSITE:PS51152ProteinModelPortal:Q9SYH4Proteomes:UP000006548Reactome:R-ATH-2426168
RefSeq:NP_175818.1scanprosite:PS00686SMART:SM00521SMR:Q9SYH4
STRING:3702.AT1G54160.1TAIR:AT1G54160tair10-symbols:NF-YA5tair10-symbols:NFYA5
UniGene:At.48305UniGene:At.57160UniProt:Q9SYH4
Coordinates (TAIR10) chr1:-:20217581..20218706
Molecular Weight (calculated) 33775.60 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.63
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVFQRKEDS SWGNSMPTTN SNIQGSESFS LTKDMIMSTT QLPAMKHSGL QLQNQDSTSS QSTEEESGGG EVASFGEYKR YGCSIVNNNL SGYIENLGKP
101: IENYTKSITT SSMVSQDSVF PAPTSGQISW SLQCAETSHF NGFLAPEYAS TPTALPHLEM MGLVSSRVPL PHHIQENEPI FVNAKQYHAI LRRRKHRAKL
201: EAQNKLIKCR KPYLHESRHL HALKRARGSG GRFLNTKKLQ ESSNSLCSSQ MANGQNFSMS PHGGGSGIGS SSISPSSNSN CINMFQNPQF RFSGYPSTHH
301: ASALMSGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)