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AT5G06510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At5g06510-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear factor Y, subunit A10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit A10 (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15818eggNOG:COG5224eggNOG:KOG1561EMBL:AP002543
EMBL:AY084643EMBL:CP002688EnsemblPlants:AT5G06510EnsemblPlants:AT5G06510.1
EnsemblPlants:AT5G06510.2entrez:830539ExpressionAtlas:Q8LFU0GeneID:830539
Genevisible:Q8LFU0GO:GO:0003677GO:GO:0003700GO:GO:0006351
GO:GO:0016602hmmpanther:PTHR12632hmmpanther:PTHR12632:SF7HOGENOM:HOG000240278
InParanoid:Q8LFU0InterPro:IPR001289InterPro:IPR018362iPTMnet:Q8LFU0
KEGG:ath:AT5G06510KO:K08064OMA:QSACFEFPANTHER:PTHR12632
PaxDb:Q8LFU0Pfam:PF02045Pfam:Q8LFU0Pfscan:PS51152
PhylomeDB:Q8LFU0PRIDE:Q8LFU0PRO:PR:Q8LFU0PROSITE:PS00686
PROSITE:PS51152ProteinModelPortal:Q8LFU0Proteomes:UP000006548Reactome:R-ATH-2426168
RefSeq:NP_196269.1RefSeq:NP_974741.1scanprosite:PS00686SMART:SM00521
SMR:Q8LFU0STRING:3702.AT5G06510.1TAIR:AT5G06510tair10-symbols:NF-YA10
UniGene:At.32843UniProt:Q8LFU0
Coordinates (TAIR10) chr5:+:1985439..1986591
Molecular Weight (calculated) 29796.00 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.64
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTEELLSPP QTPWWNAFGS QPLTTESLSG EASDSFTGVK AVTTEAEQGV VDKQTSTTLF TFSPGGEKSS RDVPKPHVAF AMQSACFEFG FAQPMMYTKH
101: PHVEQYYGVV SAYGSQRSSG RVMIPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR GSGGRFLNTK TADAAKQSKP
201: SNSQSSEVFH PENETINSSR EANESNLSDS AVTSMDYFLS SSAYSPGGMV MPIKWNAAAM DIGCCKLNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)