AT4G04750.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.854 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G04760.1); Has 35831 Blast hits to 35204 proteins in 2351 species: Archae - 638; Bacteria - 18535; Metazoa - 5452; Fungi - 6963; Plants - 2695; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:2418110..2422624 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51680.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAEESLLPSH TEDVSASPNK SSSLLSEISN ASTRPFVLAF TVGSCGALSF GCIVGYTAPT QSSIMKDLNL SIADFSFFGS ILTVGLILGA LICGKLADLV 101: GRVYTIWITN ILVLIGWLAI AFAKDVRLLD LGRLLQGISV GISSYLGPIY ISELAPRNLR GAASSLMQLF VGVGLSAFYA LGTAVAWRSL AILGSIPSLV 201: VLPLLFFIPE SPRWLAKVGR EKEVEGVLLS LRGAKSDVSD EAATILEYTK HVEQQDIDSR GFFKLFQRKY ALPLTIGVVL ISMPQLGGLN GYTFYTDTIF 301: TSTGVSSDIG FILTSIVQMT GGVLGVLLVD ISGRRSLLLF SQAGMFLGCL ATAISFFLQK NNCWETGTPI MALISVMVYF GSYGLGMGPI PWIIASEIYP 401: VDVKGAAGTV CNLVTSISSW LVTYSFNFLL QWSSTGTFMM FATVMGLGFV FTAKLVPETK GKSLEEIQSA FTDSTSEDST IF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)