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AT5G17220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutathione S-transferase phi 12
Curator
Summary (TAIR10)
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.
Computational
Description (TAIR10)
glutathione S-transferase phi 12 (GSTF12); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase F11 (TAIR:AT3G03190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17220-MONOMEREC:2.5.1.18eggNOG:COG0625eggNOG:KOG0867
EMBL:AB005238EMBL:AB117793EMBL:AF288189EMBL:CP002688
EnsemblPlants:AT5G17220EnsemblPlants:AT5G17220.1entrez:831586Gene3D:1.20.1050.10
Gene3D:3.40.30.10GeneID:831586Genevisible:Q9FE46GO:GO:0004364
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006749
GO:GO:0009407GO:GO:0009636GO:GO:0009705GO:GO:0043169
GO:GO:0046283GO:GO:1900384Gramene:AT5G17220.1gramene_pathway:1.11.1.9
gramene_pathway:PWY-4081hmmpanther:PTHR11260hmmpanther:PTHR11260:SF186HOGENOM:HOG000125746
InParanoid:Q9FE46InterPro:IPR004045InterPro:IPR004046InterPro:IPR010987
InterPro:IPR012336KEGG:ath:AT5G17220KO:K00799OMA:YLMSITD
PaxDb:Q9FE46Pfam:PF00043Pfam:PF02798Pfam:Q9FE46
Pfscan:PS50404Pfscan:PS50405PhylomeDB:Q9FE46PRIDE:Q9FE46
PRO:PR:Q9FE46PROSITE:PS50404PROSITE:PS50405ProteinModelPortal:Q9FE46
Proteomes:UP000006548RefSeq:NP_197224.1SMR:Q9FE46STRING:3702.AT5G17220.1
SUPFAM:SSF47616SUPFAM:SSF52833TAIR:AT5G17220tair10-symbols:ATGSTF12
tair10-symbols:GST26tair10-symbols:GSTF12tair10-symbols:TT19UniGene:At.24835
UniProt:Q9FE46
Coordinates (TAIR10) chr5:+:5658528..5659322
Molecular Weight (calculated) 24582.00 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.06
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVKLYGQVT AACPQRVLLC FLEKGIEFEI IHIDLDTFEQ KKPEHLLRQP FGQVPAIEDG DFKLFESRAI ARYYATKFAD QGTNLLGKSL EHRAIVDQWA
101: DVETYYFNVL AQPLVINLII KPRLGEKCDV VLVEDLKVKL GVVLDIYNNR LSSNRFLAGE EFTMADLTHM PAMGYLMSIT DINQMVKARG SFNRWWEEIS
201: DRPSWKKLMV LAGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)