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AT2G37260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY family transcription factor family protein
Curator
Summary (TAIR10)
Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.Loss of function alleles are associated with a reduction in interploidy lethality.
Computational
Description (TAIR10)
TRANSPARENT TESTA GLABRA 2 (TTG2); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPC2eggNOG:ENOG410YFS5EMBL:AB289607EnsemblPlants:AT2G37260
EnsemblPlants:AT2G37260.1entrez:818303ExpressionAtlas:A7BI37Gene3D:2.20.25.80
GeneID:818303GO:GO:0003700GO:GO:0043565Gramene:AT2G37260.1
hmmpanther:PTHR31221hmmpanther:PTHR31221:SF1InterPro:IPR003657OMA:CPLPRRA
PaxDb:A7BI37Pfam:PF03106Pfam:Q9ZUU0Pfscan:PS50811
PhylomeDB:A7BI37PRIDE:A7BI37PROSITE:PS50811ProteinModelPortal:A7BI37
RefSeq:NP_181263.2SMART:SM00774SMR:A7BI37SMR:Q9ZUU0
STRING:3702.AT2G37260.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT2G37260
tair10-symbols:ATWRKY44tair10-symbols:DSL1tair10-symbols:TTG2tair10-symbols:WRKY44
UniGene:At.26513UniProt:A7BI37UniProt:Q9ZUU0
Coordinates (TAIR10) chr2:+:15645277..15646792
Molecular Weight (calculated) 47143.60 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.90
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVNDGERVV IAKPVASRPS SSSGFRTFTE LLTDSVTVSP QTTCHEIVDA AIRPKTLRFN QPVAASVSCP RAEVKGIGNG MSCDDDSDSR NYVVYKPKAK
101: LVSKATVSAL ANMLQGNRQQ TWRQSEAVSY GKSVSQGTHR AGPNLVQKVP SFTESETSTG DRSSVDGYNW RKYGQKQVKG SECPRSYYKC THPKCPVKKK
201: VERSVEGQVS EIVYQGEHNH SKPSCPLPRR ASSSISSGFQ KPPKSIASEG SMGQDPNNNL YSPLWNNQSN DSTQNRTEKM SEGCVITPFE FAVPRSTNSN
301: PGTSDSGCKS SQCDEGELDD PSRSKRRKNE KQSSEAGVSQ GSVESDSLED GFRWRKYGQK VVGGNAYPRS YYRCTSANCR ARKHVERASD DPRAFITTYE
401: GKHNHHLLLS PPSSSTLPFN SPQLSKQTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)