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AT5G40330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 23
Curator
Summary (TAIR10)
Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.
Computational
Description (TAIR10)
myb domain protein 23 (MYB23); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 0 (TAIR:AT3G27920.1); Has 9054 Blast hits to 8348 proteins in 517 species: Archae - 0; Bacteria - 0; Metazoa - 771; Fungi - 507; Plants - 5936; Viruses - 3; Other Eukaryotes - 1837 (source: NCBI BLink).
Protein Annotations
BioGrid:19282eggNOG:COG5147eggNOG:KOG0048EMBL:AB006702
EMBL:AY519631EMBL:BT025285EMBL:CP002688EMBL:Z68158
EMBL:Z95747EnsemblPlants:AT5G40330EnsemblPlants:AT5G40330.1entrez:834031
Gene3D:1.10.10.60GeneID:834031Genevisible:Q96276GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010026GO:GO:0010053GO:GO:0010091Gramene:AT5G40330.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF625HOGENOM:HOG000237600InParanoid:Q96276
IntAct:Q96276InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT5G40330KO:K09422OMA:MDYVRTHPaxDb:Q96276
Pfam:PF00249Pfam:Q96276Pfscan:PS51294PhylomeDB:Q96276
PIR:T52283PRIDE:Q96276PRO:PR:Q96276PROSITE:PS51294
ProteinModelPortal:Q96276Proteomes:UP000006548RefSeq:NP_198849.1SMART:SM00717
SMR:Q96276STRING:3702.AT5G40330.1SUPFAM:SSF46689TAIR:AT5G40330
tair10-symbols:ATMYB23tair10-symbols:ATMYBRTFtair10-symbols:MYB23UniGene:At.5400
UniProt:Q96276
Coordinates (TAIR10) chr5:+:16127849..16129468
Molecular Weight (calculated) 24944.80 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.60
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MRMTRDGKEH EYKKGLWTVE EDKILMDYVR THGQGHWNRI AKKTGLKRCG KSCRLRWMNY LSPNVNRGNF TDQEEDLIIR LHKLLGNRWS LIAKRVPGRT
101: DNQVKNYWNT HLSKKLGLGD HSTAVKAACG VESPPSMALI TTTSSSHQEI SGGKNSTLRF DTLVDESKLK PKSKLVHATP TDVEVAATVP NLFDTFWVLE
201: DDFELSSLTM MDFTNGYCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)