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AT1G79840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18433418 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator
Summary (TAIR10)
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational
Description (TAIR10)
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:29541eggNOG:ENOG410IH46eggNOG:ENOG410XSUDEMBL:AC011717
EMBL:AF360294EMBL:AJ457046EMBL:BT001956EMBL:CP002684
EMBL:L32873EMBL:Z54356EnsemblPlants:AT1G79840EnsemblPlants:AT1G79840.1
entrez:844323ExpressionAtlas:P46607Gene3D:1.10.10.60Gene3D:3.30.530.20
GeneID:844323Genevisible:P46607GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0008289GO:GO:0043565hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF272HOGENOM:HOG000243256InParanoid:P46607InterPro:IPR001356
InterPro:IPR002913InterPro:IPR009057InterPro:IPR017970InterPro:IPR023393
iPTMnet:P46607ncoils:CoilPaxDb:P46607Pfam:P46607
Pfam:PF00046Pfam:PF01852Pfscan:PS50071Pfscan:PS50848
PhylomeDB:P46607PIR:D96829PIR:S71478PRIDE:P46607
PRO:PR:P46607PROSITE:PS00027PROSITE:PS50071PROSITE:PS50848
ProteinModelPortal:P46607Proteomes:UP000006548RefSeq:NP_565223.1scanprosite:PS00027
SMART:SM00234SMART:SM00389SMR:P46607STRING:3702.AT1G79840.2
SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT1G79840tair10-symbols:GL2
UniGene:At.19986UniProt:P46607
Coordinates (TAIR10) chr1:+:30037526..30041013
Molecular Weight (calculated) 83211.20 Da
IEP (calculated) 6.48
GRAVY (calculated) -0.51
Length 747 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)