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AT1G02065.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 8
Curator
Summary (TAIR10)
Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 903 Blast hits to 889 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 44; Fungi - 4; Plants - 841; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:24510eggNOG:ENOG410IZ73eggNOG:ENOG41120ICEMBL:AJ011641
EMBL:AJ011642EMBL:AK118174EMBL:CP002684EMBL:U89959
EnsemblPlants:AT1G02065EnsemblPlants:AT1G02065.1entrez:839275ExpressionAtlas:Q8GXL3
Gene3D:4.10.1100.10GeneID:839275GO:GO:0003677GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0009554
GO:GO:0009556GO:GO:0030154GO:GO:0046872GO:GO:0048653
hmmpanther:PTHR31251hmmpanther:PTHR31251:SF4HOGENOM:HOG000131786InParanoid:Q8GXL3
InterPro:IPR004333KEGG:ath:AT1G02065OMA:STPRCQAPaxDb:Q8GXL3
Pfam:PF03110Pfam:Q8GXL3Pfscan:PS51141PhylomeDB:Q8GXL3
PIR:T52594PRIDE:Q8GXL3PRO:PR:Q8GXL3PROSITE:PS51141
ProteinModelPortal:Q8GXL3Proteomes:UP000006548RefSeq:NP_683267.1SMR:Q8GXL3
STRING:3702.AT1G02065.1SUPFAM:SSF103612TAIR:AT1G02065tair10-symbols:SPL8
UniGene:At.499UniProt:Q8GXL3
Coordinates (TAIR10) chr1:+:365625..367149
Molecular Weight (calculated) 36828.90 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.87
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)