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AT1G25450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 5
Curator
Summary (TAIR10)
Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 5 (KCS5); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 6 (TAIR:AT1G68530.1); Has 4033 Blast hits to 4019 proteins in 981 species: Archae - 0; Bacteria - 1511; Metazoa - 0; Fungi - 25; Plants - 2349; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G25450-MONOMERBioGrid:24368ChEMBL:CHEMBL2242737EC:2.3.1.199
eggNOG:ENOG410IHMWeggNOG:ENOG410Y5VHEMBL:AC079281EMBL:AY088928
EMBL:BT004205EMBL:CP002684EnsemblPlants:AT1G25450EnsemblPlants:AT1G25450.1
entrez:839131Gene3D:3.40.47.10GeneID:839131Genevisible:Q9C6L5
GO:GO:0005783GO:GO:0006633GO:GO:0009409GO:GO:0009416
GO:GO:0009922GO:GO:0016020GO:GO:0016021GO:GO:0048868
Gramene:AT1G25450.1gramene_pathway:2.3.1.-gramene_pathway:PWY-5080hmmpanther:PTHR31561
hmmpanther:PTHR31561:SF5HOGENOM:HOG000238893InParanoid:Q9C6L5InterPro:IPR012392
InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039KEGG:00061+2.3.1.180
KEGG:00062+2.3.1.199KEGG:ath:AT1G25450KO:K15397OMA:IFTAMED
PANTHER:PTHR31561PaxDb:Q9C6L5Pfam:PF08392Pfam:PF08541
Pfam:Q9C6L5PhylomeDB:Q9C6L5PIR:F86384PIRSF:PIRSF036417
PRIDE:Q9C6L5PRO:PR:Q9C6L5ProteinModelPortal:Q9C6L5Proteomes:UP000006548
RefSeq:NP_173916.1SMR:Q9C6L5STRING:3702.AT1G25450.1SUPFAM:SSF53901
TAIR:AT1G25450tair10-symbols:CER60tair10-symbols:KCS5TMHMM:TMhelix
UniGene:At.48237UniPathway:UPA00094UniProt:Q9C6L5
Coordinates (TAIR10) chr1:-:8938679..8940282
Molecular Weight (calculated) 55656.00 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.02
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDFSSSVKL KYVKLGYQYL INNFLTLLLI PVIATVAIEL LRMGPEEILS VLNSLHFELL HILCSSFLII FVSTVYFMSK PRTVYLVDYS CYKPPVTCRV
101: PFSSFMEHSR LILKDNPKSV EFQMRILERS GLGEETCLPP AIHYIPPTPT MESARNEAQM VIFTAMEDLF KNTGLKPKDI DILIVNCSLF SPTPSLSAMI
201: INKYKLRSNI KSYNLSGMGC SASLISVDVA RDLLQVHPNS NAIIISTEII TPNYYKGNER AMLLPNCLFR MGGAAILLSN RRSDRWRAKY KLCHLVRTHR
301: GADDKSYNCV MEQEDKNGNV GINLSKDLMT IAGEALKANI TTIGPLVLPA SEQLLFLSSL IGRKIFNPKW KPYIPDFKQA FEHFCIHAGG RAVIDELQKN
401: LQLSGEHVEA SRMTLHRFGN TSSSSLWYEL SYIEAQGRMK RNDRVWQIAF GSGFKCNSAV WKCNRTIKTP TDGAWSDCIE RYPVFIPEVV KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)