suba logo
AT2G19810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCCH-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCCH-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT4G29190.1); Has 721 Blast hits to 690 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 6; Plants - 412; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR0ZeggNOG:KOG1595EMBL:AC005169EMBL:AY084253
EMBL:AY136395EMBL:BT002114EMBL:CP002685EnsemblPlants:AT2G19810
EnsemblPlants:AT2G19810.1entrez:816500GeneID:816500Genevisible:O82199
GO:GO:0003677GO:GO:0003700GO:GO:0005886GO:GO:0006355
GO:GO:0006979GO:GO:0046872Gramene:AT2G19810.1hmmpanther:PTHR14493
HOGENOM:HOG000237601InParanoid:O82199InterPro:IPR000571iPTMnet:O82199
KEGG:ath:AT2G19810OMA:MIGESHRPaxDb:O82199Pfam:O82199
Pfscan:PS50103PhylomeDB:O82199PIR:D84581PRIDE:O82199
PRO:PR:O82199PROSITE:PS50103ProteinModelPortal:O82199Proteomes:UP000006548
RefSeq:NP_179571.1SMART:SM00356SMR:O82199STRING:3702.AT2G19810.1
TAIR:AT2G19810UniGene:At.12895UniProt:O82199
Coordinates (TAIR10) chr2:+:8550419..8551498
Molecular Weight (calculated) 39847.50 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.71
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MMIGESHRGF NPTVHIPPWP LSEDLTVSDI YGSPDGGSSM MEALAELQRY LPSNEPDPDS DPDLSGPDSP IDAYTCDHFR MYEFKVRRCA RGRSHDWTEC
101: PYAHPGEKAR RRDPRKFHYS GTACPEFRKG CCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQIR VLPNQSPDRV DSFDVLSPTI
201: RRAFQFSISP SSNSPPVSPR GDSDSSCSLL SRSLGSNLGN DVVASLRNLQ LNKVKSSLSS SYNNQIGGYG SGFGSPRGSV LGPGFRSLPT TPTRPGFMNI
301: WENGLEEEPA MERVESGREL RAQLFEKLSK ENCMGRIEPD PDQGAGDTPD VGWVSDLVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)