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AT1G67340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HCP-like superfamily protein with MYND-type zinc finger
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
BioGrid:28276eggNOG:ENOG410IKS0eggNOG:ENOG410YZIDEMBL:AC002130
EMBL:AY057623EMBL:AY093102EMBL:BT000146EMBL:CP002684
EnsemblPlants:AT1G67340EnsemblPlants:AT1G67340.1entrez:843055Gene3D:1.25.40.10
GeneID:843055Genevisible:Q9FYF9GO:GO:0005634GO:GO:0016567
Gramene:AT1G67340.1hmmpanther:PTHR12298hmmpanther:PTHR12298:SF7HOGENOM:HOG000238617
InParanoid:Q9FYF9IntAct:Q9FYF9InterPro:IPR001810InterPro:IPR002893
InterPro:IPR011990KEGG:ath:AT1G67340OMA:MVDWWASPaxDb:Q9FYF9
Pfam:PF01753Pfam:PF08238Pfam:Q9FYF9Pfscan:PS50865
PhylomeDB:Q9FYF9PIR:H96696PRIDE:Q9FYF9PRO:PR:Q9FYF9
ProteinModelPortal:Q9FYF9Proteomes:UP000006548RefSeq:NP_564894.1STRING:3702.AT1G67340.1
SUPFAM:SSF144232SUPFAM:SSF81383SUPFAM:SSF81901TAIR:AT1G67340
UniGene:At.25264UniPathway:UPA00143UniProt:Q9FYF9
Coordinates (TAIR10) chr1:+:25230323..25231622
Molecular Weight (calculated) 41014.40 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.17
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPSRKTKRV FSCDFTPGRK RRRCVVVPSS VSPVPENTTG ADLLDSIPDD LVISILCKLG STSRCPADFI NVLLTCKRLK GLAMNPIVLS RLSPKAIAVK
101: AHNWSEYSHR FLKRCVDAGS LEACYTLGMI RFYCLQNRGN GASLMAKAAI SSHAPALYSL AVIQFNGSGG SKNDKDLRAG VALCARAAFL GHVDALRELG
201: HCLQDGYGVP QNVSEGRRFL VQANARELAA VLSSGIQARS TWLSLSQPPP PVVPNHGQQT CPLLSDFGCN VPAPETHPAN RFLADWFAVR GGDCPGDGLR
301: LCSHAGCGRP ETRKHEFRRC SVCGVVNYCS RACQALDWKL RHKMDCAPVQ RWLEEGDGGE GNVQIDGNGN GDNVLLPMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)