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AT1G49780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plant U-box 26 (PUB26); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 25 (TAIR:AT3G19380.1); Has 2464 Blast hits to 2403 proteins in 144 species: Archae - 0; Bacteria - 20; Metazoa - 134; Fungi - 16; Plants - 2081; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1602-MONOMEREC:6.3.2.-eggNOG:ENOG410IGHZeggNOG:ENOG410YB5U
EMBL:AC011807EMBL:AK118346EMBL:BT029013EMBL:CP002684
EnsemblPlants:AT1G49780EnsemblPlants:AT1G49780.1entrez:841401Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:841401Genevisible:Q9FXA4GO:GO:0004842
GO:GO:0016874Gramene:AT1G49780.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF52
HOGENOM:HOG000238505InParanoid:Q9FXA4InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT1G49780OMA:MPGNLEP
PaxDb:Q9FXA4Pfam:PF04564Pfam:Q9FXA4Pfscan:PS51698
PhylomeDB:Q9FXA4PIR:E96534PRIDE:Q9FXA4PRO:PR:Q9FXA4
PROSITE:PS51698ProteinModelPortal:Q9FXA4Proteomes:UP000006548RefSeq:NP_175400.1
SMART:SM00504SMR:Q9FXA4STRING:3702.AT1G49780.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT1G49780tair10-symbols:PUB26UniGene:At.38168
UniPathway:UPA00143UniProt:Q9FXA4
Coordinates (TAIR10) chr1:-:18429024..18430289
Molecular Weight (calculated) 45965.90 Da
IEP (calculated) 6.70
GRAVY (calculated) 0.13
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)