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AT3G19380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 25
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plant U-box 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 2521 Blast hits to 2449 proteins in 133 species: Archae - 0; Bacteria - 22; Metazoa - 177; Fungi - 24; Plants - 2091; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2166-MONOMEREC:6.3.2.-eggNOG:ENOG410IGHZeggNOG:ENOG410YB5U
EMBL:AB025624EMBL:AK229923EMBL:AY086503EMBL:BT025982
EMBL:CP002686EnsemblPlants:AT3G19380EnsemblPlants:AT3G19380.1entrez:821472
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:821472Genevisible:Q9LT79
GO:GO:0004842GO:GO:0010200GO:GO:0016874Gramene:AT3G19380.1
hmmpanther:PTHR22849hmmpanther:PTHR22849:SF52HOGENOM:HOG000238505InParanoid:Q9LT79
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024
KEGG:ath:AT3G19380OMA:DCIANSDPaxDb:Q9LT79Pfam:PF04564
Pfam:Q9LT79Pfscan:PS51698PhylomeDB:Q9LT79PRIDE:Q9LT79
PRO:PR:Q9LT79PROSITE:PS51698ProteinModelPortal:Q9LT79Proteomes:UP000006548
RefSeq:NP_566632.1SMART:SM00504SMR:Q9LT79STRING:3702.AT3G19380.1
SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G19380tair10-symbols:PUB25
UniGene:At.5707UniPathway:UPA00143UniProt:Q9LT79
Coordinates (TAIR10) chr3:-:6714602..6715867
Molecular Weight (calculated) 46058.50 Da
IEP (calculated) 7.34
GRAVY (calculated) 0.03
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)