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AT5G24320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G53500.1); Has 26833 Blast hits to 16918 proteins in 673 species: Archae - 62; Bacteria - 5430; Metazoa - 9873; Fungi - 5372; Plants - 2902; Viruses - 3; Other Eukaryotes - 3191 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AB006701EMBL:CP002688
EnsemblPlants:AT5G24320EnsemblPlants:AT5G24320.1entrez:832502ExpressionAtlas:Q9FNF0
Gene3D:2.130.10.10GeneID:832502Gramene:AT5G24320.1hmmpanther:PTHR14221
hmmpanther:PTHR14221:SF1HOGENOM:HOG000239143InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472ncoils:Coil
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9FNF0
PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_851068.1scanprosite:PS00678SMART:SM00320
SMR:Q9FNF0STRING:3702.AT5G24320.2SUPFAM:SSF50978TAIR:AT5G24320
UniGene:At.43910UniProt:Q9FNF0
Coordinates (TAIR10) chr5:-:8284858..8287651
Molecular Weight (calculated) 76821.40 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.36
Length 694 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLIEEEEE SRFFDAHEEI ASCSSPCKIE SPSSISGEFR YDVWIKSPGN TEERREKFLK WMGLSSTVNE SKSGNVYRLS SSVNESAVLM SLKSDDDEFS
101: SSRCDSFSPS ESVDRVVNES LCKEEGEVDS GMVLRNLGFV DDGDISSSLC SLSSSPVSDK IVKEHGEPKL LPDPMVAEEE REVSGIMKRV KEKWLSRLYK
201: VRNKRSAGGD DNGGEVAVCG SRIERVKVKE YKKEAKELSA LFKGQEIQAH EGAILAMKFS PDGRYLASAG EDGVLRVWSV VEDERCEEHD VPKIDPSCIY
301: FEVSKLSELR PVAVEKDGIT GSLMSPRKTT ESACVIIPPK IFRVLDKPLH EFLGHSGDIL DISWSKNNRL LSASVDNSVR LWQIGCEDCL GIFSHNNYVT
401: SVQFNPVDDD HFISGSIDGK VRIWSASQCQ VVDWADARGI VTAVCYQPDG QAVIIGTLTS DCRFYNVSGH CLQLDGHICL HNKKKSSNKR IIGFQFDSTD
501: PSRVMVASAD SQVRIISGRN VVHKYKGSRN AGNQISASFT ADGKHIVSAC DDSSVYVWNC VGHDPEQSSP GFFSHTKRLK IRSFEKFSAD VSVAIPWCGF
601: TPVLSGGSEL SPSLFSLGRE YVLDSPKGSA TWPEEKLASS FSPVKAIRRS HYKFLRSSCR RTSESSHLWG LVIVTGGWDG RIKLFHNYGL PVPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)