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AT3G04590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G33620.4); Has 3258 Blast hits to 2940 proteins in 204 species: Archae - 0; Bacteria - 25; Metazoa - 1636; Fungi - 293; Plants - 789; Viruses - 3; Other Eukaryotes - 512 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWB1eggNOG:ENOG4111EFQEMBL:CP002686EnsemblPlants:AT3G04590
EnsemblPlants:AT3G04590.1entrez:819615ExpressionAtlas:F4J4T1GeneID:819615
GO:GO:0003677Gramene:AT3G04590.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF22
InterPro:IPR005175PaxDb:F4J4T1Pfam:PF03479Pfscan:PS51742
PhylomeDB:F4J4T1PRIDE:F4J4T1PROSITE:PS51742ProteinModelPortal:F4J4T1
Proteomes:UP000006548RefSeq:NP_850512.2SMR:F4J4T1SUPFAM:SSF117856
TAIR:AT3G04590UniGene:At.19818UniProt:F4J4T1
Coordinates (TAIR10) chr3:-:1239213..1241603
Molecular Weight (calculated) 32579.10 Da
IEP (calculated) 10.25
GRAVY (calculated) -0.62
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPNESHHHH QQQQLHHLHQ QQQQQQQQQR LTSPYFHHQL QHHHHLPTTV ATTASTGNAV PSSNNGLFPP QPQPQHQPND GSSSLAVYPH SVPSSAVTAP
101: MEPVKRKRGR PRKYVTPEQA LAAKKLASSA SSSSAKQRRE LAAVTGGTVS TNSGSSKKSQ LGSVGKTGQC FTPHIVNIAP GEDVVQKIMM FANQSKHELC
201: VLSASGTISN ASLRQPAPSG GNLPYEGQYE ILSLSGSYIR TEQGGKSGGL SVSLSASDGQ IIGGAIGSHL TAAGPVQVIL GTFQLDRKKD AAGSGGKGDA
301: SNSGKVCRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)