suba logo
AT2G20830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transferases;folic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transferases;folic acid binding; FUNCTIONS IN: folic acid binding, transferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formiminotransferase, N-terminal subdomain (InterPro:IPR012886), Formiminotransferas, N- and C-terminal subdomains (InterPro:IPR022384); Has 654 Blast hits to 651 proteins in 216 species: Archae - 14; Bacteria - 317; Metazoa - 90; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
DNASU:816615eggNOG:COG3643eggNOG:ENOG410IJD6EMBL:AC006234
EMBL:AF360255EMBL:AY040069EMBL:CP002685EnsemblPlants:AT2G20830
EnsemblPlants:AT2G20830.1entrez:816615ExpressionAtlas:Q9SKT4Gene3D:3.30.990.10
GeneID:816615GO:GO:0005542GO:GO:0016740Gramene:AT2G20830.1
hmmpanther:PTHR12234HOGENOM:HOG000240191InterPro:IPR012886InterPro:IPR013802
InterPro:IPR022384KEGG:00340+2.1.2.5KEGG:00670+2.1.2.5Pfam:PF07837
PhylomeDB:Q9SKT4PIR:H84593Proteomes:UP000006548RefSeq:NP_565488.1
SMART:SM01221SMART:SM01222SMR:Q9SKT4STRING:3702.AT2G20830.2
SUPFAM:SSF55116TAIR:AT2G20830UniGene:At.13652unipathway:UPA00193
unipathway:UPA00379UniProt:Q9SKT4
Coordinates (TAIR10) chr2:-:8968370..8969798
Molecular Weight (calculated) 32138.70 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.09
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MLREMLGCCK VYISEARNKT ALEAIERALK PFPPAAIVNK FEDAAYGRVG YTVVSSLANG SSSSLKNAVF AMVKTALDTI NLELHCGSHP RLGVVDHICF
101: HPLSQTSIEQ VSSVANSLAM DIGSILRVPT YLYGAAEKEQ CTLDSIRRKL GYFKANREGH EWAGGFDLEM VPLKPDAGPQ EVSKAKGVVA VGACGWVSNY
201: NVPVMSNDLK AVRRIARKTS ERGGGLASVQ TMALVHGEGV IEVACNLLNP SQVGGDEVQG LIERLGREEG LLVGKGYYTD YTPDQIVERY MDLLNNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)