AT1G56180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in 83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21026243..21028047 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42589.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSPSSPPC LRSLSPSFSR QIGFLVPRVQ SLVFGSVRKH ELRRPSALRE WREYEDAVKR KDLAGALRFL KSIENDEQRD SVESIVTAKL SGLGALELER 101: DWQVLDACLN ADDMRLVGSA FRFLKERGLL ANFGKFTSIV LEGTREVTPT VLKSATGLEV TKLSPKKWGL SGGSSIALAA LLGGVSYLLS QEIDVRPNLA 201: VILGLAYLDS VFLGGTCLAQ VSCYWPPHKR RIVVHEAGHL LVAYLMGCPI RGVILDPVVA MQMGVQGQAG TQFWDQKMES EIAEGRLSGS SFDRYSMVLF 301: AGIAAEALVY GEAEGGENDE NLFRSISVLL EPPLSVAQMS NQARWSVLQS YNLLKWHKAA HRAAVEALQV GSPLSIVIRR IEEAMSSSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)