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AT4G10030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G52570.1); Has 3883 Blast hits to 3883 proteins in 1174 species: Archae - 26; Bacteria - 2816; Metazoa - 266; Fungi - 159; Plants - 102; Viruses - 3; Other Eukaryotes - 511 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0596eggNOG:KOG2382EMBL:AL049481EMBL:AL161516
EMBL:AY088446EMBL:CP002687EnsemblPlants:AT4G10030EnsemblPlants:AT4G10030.1
entrez:826594ESTHER:arath-T5L19.160Gene3D:3.40.50.1820GeneID:826594
GO:GO:0016787Gramene:AT4G10030.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF833
HOGENOM:HOG000238492InterPro:IPR000073InterPro:IPR029058KEGG:ath:AT4G10030
MEROPS:S33.A21OMA:PLLCPPCPfam:PF12697PhylomeDB:Q9T0G1
PIR:T04007PRO:PR:Q9T0G1Proteomes:UP000006548RefSeq:NP_192741.1
SMR:Q9T0G1STRING:3702.AT4G10030.1SUPFAM:SSF53474TAIR:AT4G10030
UniGene:At.33656UniGene:At.48839UniProt:Q9T0G1
Coordinates (TAIR10) chr4:-:6270490..6273098
Molecular Weight (calculated) 42150.30 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.27
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAVSCSTAS SSGGCAFRFR SKTSIHSPNF IRIGTNSQSD RFCNHRLELV HGTRKVKGAS VRMALVEERQ STSKDVAEPP RVLAYDLVQG ALVKWRWKDD
101: KSVPDTPTAV LLHGILGSGK NWGTFARRLA HEFPTWQFLL VDLRCHGDST SLKKRGPHSV ATTASDVLKL VGQLRLTPRV LVGHSFGGKV VLSMVEQAAK
201: PLPRPVRAWV LDATPGKVRA GGDGEDHPRE LISFLRKLPK VVLSKREVLK ALINEGFSND VAQWVITNLR PTGPSASSFS WTFDLDGIAE LYQSYEETNL
301: WNFVENLPRG VHVNFLKAER SLHRWALEDL QRIHAAEELA SEEGGGVEMH VLEDAGHWVH TDNPDGLFRI LSSSFQVLRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)